PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_31006 | ||||||||
Common Name | KK1_033301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ARF | ||||||||
Protein Properties | Length: 792aa MW: 87859 Da PI: 6.7967 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.9 | 1.1e-24 | 127 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ ++ C.cajan_31006 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWQN-EK 219 99*****************************8544444..48************************************************544.88 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ C.cajan_31006 220 NQLLLGIRRA 229 889***9997 PP | |||||||
2 | Auxin_resp | 121.9 | 4.8e-40 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k C.cajan_31006 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-49 | 112 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-41 | 120 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.66E-23 | 126 | 228 | No hit | No description |
SMART | SM01019 | 1.1E-25 | 127 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.056 | 127 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.7E-35 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.7E-7 | 656 | 748 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.25E-6 | 662 | 738 | No hit | No description |
PROSITE profile | PS51745 | 22.691 | 663 | 747 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MRLSSAGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE 60 VDAHIPNYPS LPPQLICQLH NMTMHADVET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWQNEKN QLLLGIRRAN RPQTVMPSSV 240 LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSPF PLRLKRPWPP GLPSFHGMKD DDFGMNSPLL WLRDTDRGLQ SLNFQGIGVN 420 PWMQPRFDPS MLNMQTDLYQ AAAAAAVQDM RSLDPSKQHS ASLLQFQQPP NFPNRNSALM 480 QAHAVSTMSQ FVSAPQPQSP PVQAISSLCQ QQNFSDTNGN PVTTVVSPLH SILGSFPQDE 540 TSHLLNISRT SSWIPVQNSS AWPSKRVAVD PLLSSGAPQC VLPQVDQLGQ PQSTMSQNAI 600 SLPPFPGRDG NNDSSTLPYQ SSNYLNTTTG TDSSLNHGMT HNIGESGFLQ SPENTGQGNP 660 LNKTFVKVYK SGSFGRSLDI TKFSSYHELR RELARMFGLE GELEDPVRSG WQLVFVDREN 720 DVLLLGDGPW PEFVNSVWCI KILSPQEVQQ MGNSGLELLN SVPSNGICDD YVSRQDPRNL 780 STGITTVGSL DY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 13 | 358 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_31006 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP278234 | 0.0 | KP278234.1 Lupinus luteus auxin response factor 6-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025621727.1 | 0.0 | auxin response factor 6 isoform X2 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A151RRL8 | 0.0 | A0A151RRL8_CAJCA; Auxin response factor | ||||
STRING | XP_004293501.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1765 | 34 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |