PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_30984 | ||||||||
Common Name | KK1_033861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | SBP | ||||||||
Protein Properties | Length: 903aa MW: 100721 Da PI: 8.3713 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.2 | 1.5e-40 | 85 | 162 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++l+++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ C.cajan_30984 85 MCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 162 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.6E-34 | 80 | 147 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.889 | 83 | 160 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-37 | 84 | 164 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.9E-30 | 86 | 159 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 3.15E-5 | 654 | 789 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 6.5E-4 | 694 | 787 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.50E-4 | 697 | 788 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 903 aa Download sequence Send to blast |
MEKVAPPPIL MQRKRDLSYA VVPGNPTDNW KWDWDTVRFA GKPPPSDAVL EEESAPPPLQ 60 LNLGRASGGN KRLRSGSPGT ASYPMCQVDN CREDLSKAKD YHRRHKVCEA HSKASKALLA 120 NQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDVTSATP APAAANFEIF 180 NLLTAIAGAS QGKFEETRSQ VPDREQLVQI LNRIPLPADL ATKLLDAGNV NGKKDHVQLQ 240 TPSSYTRHDQ LNHMPSAPLT MDLLAVLSTT LSGSGPDATT SPSQNRSCTS DGGSDKSRTS 300 ADQTRQQQKY FSSDSSNPAE ERSPSSSPVG EMQIQQPSSL HSVPFQAGYT SSGSDHSPPS 360 LNSDAQDRTG RIMFKLFDKH PSHFPGTLRT QIYNWLSNRP SDMESYIRPG CVVLSIYASM 420 SSAAWEKLEE NFLQHVHSLI QNPDSDLWRN GRFLVHSGSQ MASHKDGKIR ICKSWRTWKS 480 PELISVSPLA IVSGQETSIS LKGRNLSTPG TKIHCTGTAS YTSAEVMESA YPGVMYDKIK 540 LGGFKVQDVS PGVLGRCFIE VENGFKGNSF PVIIADETIC KELKLLESEF DEEEKICDAI 600 SEEHEHQFGR PRSREEALHF LNELGWLFQR ERFSYVHEVP YYSLDRFKFV LTFSVERNCC 660 MLVKNLLDVL VDKHLQGDWL STGSVEMLNA IQLLNRAVKG KYKGMVDLLI HYSIPSKNGT 720 SKKYVFPPNL EGPGGITPLH LAACTSGSER IVDSLTSDPQ EIGLKCWESL VDTNGQTPHA 780 YAMMRNNDSY NVQVARKVAE RRRGEISVTI ENEIEQSSLR VELKKKQSNL IKRGQSSCAR 840 CAVAEIHYNR RVPGSQGLLH RPFIYSMLAV AAVCVCVCLF FRGRPFVGSV APFSWENLDY 900 GTM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-32 | 76 | 159 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_30984 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235330 | 0.0 | AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237510.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A151RQ23 | 0.0 | A0A151RQ23_CAJCA; Squamosa promoter-binding-like protein 14 | ||||
STRING | GLYMA20G00900.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9694 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Publications ? help Back to Top | |||
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