PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_30710
Common NameKK1_033349
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 388aa    MW: 42130.8 Da    PI: 8.4129
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_30710genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.6e-4194170278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    C v+gC++dls++++yhrrhkvCevhsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  C.cajan_30710  94 CLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170
                    **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-3387155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.80491168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-3892173IPR004333Transcription factor, SBP-box
PfamPF031103.2E-3094167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDWNLKAPSW DLSEVDQANL TNMETMEGSN KYGMYGTKGE FSVDLKLGQV GNSGMESVMS  60
KSKDGVGVSK MASSSSGSSK RARALSNGTQ TVSCLVDGCH SDLSNCRDYH RRHKVCEVHS  120
KTAQVTIGGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP EPLTRSASFL  180
STYQGTQLLP FSSSHVYPST TVVNPTWGGV VGGSGDVRLH GHNQHQQLHL VDKQDLFLGS  240
SSPTGYKEGK QVAFMQGDHT HAMNSQSPHL GAGSAGQAQM FLRTSPYSES GGLRCKMFSD  300
SLTSSVHDSS RALSLLSSPQ PHSPGNGLNQ MVNPHSPLMQ PLGLSLHDNS LDPVLGPTGS  360
DHSSSMYNLA SNGSQGNDAP ALFPFQWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28941671184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_30710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237048.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020237051.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020237052.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020237053.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A151RRH20.0A0A151RRH2_CAJCA; Squamosa promoter-binding-like protein 13
STRINGGLYMA08G01450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-70SBP family protein