PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_30493

Common Name

Dof16, Dof33

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 318aa MW: 34584.5 Da PI: 8.4785

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_30493	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	103.9	9.3e-33	1	48	14	61
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++tkfCyynny+++qPr+fCk C+ryWt+GG++rnvPvG+grrknk+s C.cajan_30493 1 MDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNS 48 69********************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	24.195	1	47	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-25	1	47	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-22	1	46	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MDTKFCYYNN YNVNQPRHFC KHCQRYWTAG GTMRNVPVGA GRRKNKNSPS SASHYRQIML 60 PETLQNGSLH TSAVLTFGSD SPLCDSMASV LSLGDKSQNG VLNGFHAPKH NTNTNGDDVD 120 NSNSLGGSIM ASTLCDNATS THEESVDNKS YQGFTPWPYP WNPSGFCHPV SFYPTPPFWG 180 CMPMPVPPAS PSWSSHSFPN YPPAPTSSGP NSPTLGKHSR DGDILFQPGT ENNKSVLIPK 240 TLRIDDPTEA AKSSIWSTLG IKNDKLNNHS LNGGGLFKAF ASKGDDKNKN HGMVVEASPV 300 LQANPAALSR SLVFHERT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_30493

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020236728.1	0.0	cyclic dof factor 1
TrEMBL	A0A0K8K637	0.0	A0A0K8K637_CAJCA; Dof protein
STRING	XP_007157611.1	1e-161	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-74	cycling DOF factor 2

Publications ? help Back to Top
Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821]