PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_30375
Common NameKK1_029680
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 383aa    MW: 42743.4 Da    PI: 9.4405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_30375genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-057294123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  C.cajan_30375 72 FVCEICNKGFQRDQNLQLHRRGH 94
                   89*******************88 PP
2zf-C2H2120.00065148170123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  C.cajan_30375 148 WKCDKCSKIYAVQSDWKAHSKTC 170
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.06E-77194No hitNo description
Gene3DG3DSA:3.30.160.601.2E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0177294IPR015880Zinc finger, C2H2-like
PfamPF121715.8E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355170113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.06E-7143168No hitNo description
SMARTSM00355180148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MFPAVMSNSN SLSEEATVSC GTRIAGLNHV VTTLSPQQPQ KIKKKRSLPG NPDPDAEVIA  60
LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRNNKEVKK KAYVCPEPSC  120
VHHNPSRALG DLTGIKKHYC RKHGEKKWKC DKCSKIYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRKDSFI THRAFCDALA EESARLSANH NLTTLHTNIK PEESPNFHNL SSPPFLHHHP  240
KTIITSPFRD LSQPTSPHLS ATALLQKAAT VGAATLTGPT HHVTQLGMAE LVDSVAPERY  300
INMRSIKNND GLTRDFLGLT NGSAVDVSID VKDMLTFTGG SVEYNHHHQR YEHRHNNNSL  360
FKPQQGFGFL GTTTGPESWG NCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36144211370Zinc finger protein JACKDAW
5b3h_F2e-36144211370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_30375
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233837.10.0protein indeterminate-domain 12
SwissprotO227591e-123IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A151S1F80.0A0A151S1F8_CAJCA; Zinc finger protein MAGPIE
STRINGXP_007144666.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-126indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]