PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_30373 | ||||||||
Common Name | KK1_029678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HSF | ||||||||
Protein Properties | Length: 342aa MW: 39616 Da PI: 5.9577 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.9 | 7.9e-34 | 38 | 129 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k++++++d+++++++sws++g+sfvv+d+++f++ +Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+ + F +g+++ll+ i C.cajan_30373 38 FLTKTFDVVDDPATNHVVSWSRDGTSFVVWDPHTFSTCLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFATDGFMRGHRHLLKGI 124 9****************************************************************999.........******************* PP XXXXX CS HSF_DNA-bind 98 krkks 102 kr+k C.cajan_30373 125 KRRKA 129 **985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.2E-57 | 34 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.0E-37 | 34 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-34 | 34 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.3E-20 | 38 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.5E-31 | 38 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.3E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 77 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.3E-20 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MNHTNPVKEE YLESSYQLAS EYPPKPMEGL HDTGPPPFLT KTFDVVDDPA TNHVVSWSRD 60 GTSFVVWDPH TFSTCLLPRY FKHNNFSSFV RQLNTYGFRK IDPDRWEFAT DGFMRGHRHL 120 LKGIKRRKAP AQLTRGHHNV EVGCFELDKE IDRLRHDKLV LMMEVVNLRQ QQQKAKLCIE 180 EMERRLQGTE IRQQQMMAFL ARAIKNPAFI HQLQQKEKKM ELQEALTKKR RAIEQGARGV 240 GESSSVKVEA LEFGDSEFGI SELEMLAREM QGFGKGMIDR EVGPEVLESQ ERLDRVIDEE 300 FWEELLCSEK FERGLDMPTA EDKDEDAVKV LANQLGCFDS SH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-22 | 36 | 127 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-22 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-22 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-22 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
5hdg_A | 3e-22 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 3e-22 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 3e-22 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 3e-22 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 3e-22 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 126 | LKGIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_30373 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020233814.1 | 0.0 | heat stress transcription factor A-7a | ||||
Swissprot | Q6VBB2 | 1e-104 | HFA2B_ORYSJ; Heat stress transcription factor A-2b | ||||
TrEMBL | A0A151S1J6 | 0.0 | A0A151S1J6_CAJCA; Heat stress transcription factor A-2b | ||||
STRING | GLYMA10G03530.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 5e-95 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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