PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_29931

Common Name

KK1_030947

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SBP

Protein Properties

Length: 1038aa MW: 114900 Da PI: 7.3104

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_29931	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C++dls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ C.cajan_29931 149 VCQVEDCRTDLSNAKDYHRRHKVCDMHSKASQALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTHP 226 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.6E-32	143	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.941	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.19E-37	148	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.3E-29	150	223	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	9.9E-6	266	289	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.47E-7	806	919	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.28E-6	809	919	No hit	No description
Gene3D	G3DSA:1.25.40.20	9.9E-6	809	919	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1038 aa Download sequence Send to blast
MEAQLEGKSP YFYGPVVPEM KSVGKRSLEW DLNDWKWDGD LFTARQLNSV PSDCGSRQLF 60 PTDPEILATA DGTNNLSPAY DGVNLGEEKR ELEKRRRGVI EEAGVEMNDG TGSGSLNLNL 120 GGQVYPIIEG EEKSGKKTKI AASSSNRAVC QVEDCRTDLS NAKDYHRRHK VCDMHSKASQ 180 ALVGNVMQRF CQQCSRFHVL EEFDEGKRSC RRRLAGHNKR RRKTHPDATV VNGGSVNEEK 240 GSTYLLMSLL RILSNMHSNG SDNMRNQDVL SHLLRNLANL AGTINGRNIA SLLDGSQDLL 300 KAGTSGTMHN VPNTNSNGPE PSRPYSSSIK MDDGLIHHDP QESTLQCQMT PAHDMAKKCI 360 ASGSDGVVKL KSLSPSGPQS SNVLLSRDSL PTQSVAAGTT VGRIGLSNID LNSVYDDVQD 420 YVENPRNSHP PLPSGLGSHD HPLWVQCDSL RSSPPQTSRN SDSTSTQSPS SSSGEAQSRT 480 DRIVFKLFGK APNDFPHALR SQILNWLSHS PTEIESYIRP GCIILTIYLR LENSAWEELC 540 YNLGSSLKKL AASTDSFWRT GWIYTRVQHS VAFLYNGQVV LDVPLRLKSP QNCQILCIKP 600 LAVSASASAQ FIVKGFNLLQ SNTRLLCALE GKYLVQDSCY NLIDGADVAN EHHELQHFSF 660 SCHIPNVTGR GFIEVVEDNG LSSCSFPFIV AEKEICSEIC KLENVIEVAE TADDIQIKSK 720 LMEEKTRALH FIQEMGWLLH RNRVKVRLGS MAPVQDRFHF NRFMWLVGFA MDHDWCAVMK 780 KLLDIIFEGT VDTGDHASVE FALLEMGLLH NAVKRNCRPM VELLLKFVPL KASDDGDGKE 840 NQVKKSPDRF LFRPDTIGPA GLTPLHVAAS MHGSENVLDA LTDDPGMVAT EAWKGAKDTT 900 GLTPYDYASL RGYYSYIQLV QRKTSKTCRS QHVLDIPGTL VDSNTKQKQS EGHRSSKVSS 960 LQTEKIETTA TPHHCGLCQH KLAYGGVRRT TLVYRPAMLS MVAIAAVCVC VALLFKSSPK 1020 VYYVFQPFSW ESLEYGSI

Sequence ? help Back to Top

Protein Sequence Length: 1038 aa Download sequence Send to blast

MEAQLEGKSP YFYGPVVPEM KSVGKRSLEW DLNDWKWDGD LFTARQLNSV PSDCGSRQLF  60
PTDPEILATA DGTNNLSPAY DGVNLGEEKR ELEKRRRGVI EEAGVEMNDG TGSGSLNLNL  120
GGQVYPIIEG EEKSGKKTKI AASSSNRAVC QVEDCRTDLS NAKDYHRRHK VCDMHSKASQ  180
ALVGNVMQRF CQQCSRFHVL EEFDEGKRSC RRRLAGHNKR RRKTHPDATV VNGGSVNEEK  240
GSTYLLMSLL RILSNMHSNG SDNMRNQDVL SHLLRNLANL AGTINGRNIA SLLDGSQDLL  300
KAGTSGTMHN VPNTNSNGPE PSRPYSSSIK MDDGLIHHDP QESTLQCQMT PAHDMAKKCI  360
ASGSDGVVKL KSLSPSGPQS SNVLLSRDSL PTQSVAAGTT VGRIGLSNID LNSVYDDVQD  420
YVENPRNSHP PLPSGLGSHD HPLWVQCDSL RSSPPQTSRN SDSTSTQSPS SSSGEAQSRT  480
DRIVFKLFGK APNDFPHALR SQILNWLSHS PTEIESYIRP GCIILTIYLR LENSAWEELC  540
YNLGSSLKKL AASTDSFWRT GWIYTRVQHS VAFLYNGQVV LDVPLRLKSP QNCQILCIKP  600
LAVSASASAQ FIVKGFNLLQ SNTRLLCALE GKYLVQDSCY NLIDGADVAN EHHELQHFSF  660
SCHIPNVTGR GFIEVVEDNG LSSCSFPFIV AEKEICSEIC KLENVIEVAE TADDIQIKSK  720
LMEEKTRALH FIQEMGWLLH RNRVKVRLGS MAPVQDRFHF NRFMWLVGFA MDHDWCAVMK  780
KLLDIIFEGT VDTGDHASVE FALLEMGLLH NAVKRNCRPM VELLLKFVPL KASDDGDGKE  840
NQVKKSPDRF LFRPDTIGPA GLTPLHVAAS MHGSENVLDA LTDDPGMVAT EAWKGAKDTT  900
GLTPYDYASL RGYYSYIQLV QRKTSKTCRS QHVLDIPGTL VDSNTKQKQS EGHRSSKVSS  960
LQTEKIETTA TPHHCGLCQH KLAYGGVRRT TLVYRPAMLS MVAIAAVCVC VALLFKSSPK  1020
VYYVFQPFSW ESLEYGSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	141	223	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	224	KRRRKTH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_29931

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020234969.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A151RY99	0.0	A0A151RY99_CAJCA; Squamosa promoter-binding-like protein 1
STRING	GLYMA09G09790.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12