PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_29780 | ||||||||
Common Name | KK1_030010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 257aa MW: 28904.9 Da PI: 10.4908 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.5 | 2.1e-31 | 186 | 243 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYeg+Hnh+ C.cajan_29780 186 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDSNMLVVTYEGDHNHS 243 9*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.2E-16 | 137 | 182 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-33 | 172 | 243 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.745 | 179 | 245 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-27 | 180 | 244 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-37 | 184 | 244 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 186 | 242 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MISNKKEPEL EEVADVAVNR FREVISLLDR PRIGHARFRR APATAPPVPV FQLHQTLAVH 60 DHHHAKRLTE QKLKTSAFKV YSPPQPQPQP QPQPQNHQKE QAFTNSYVST LTGDTETLQR 120 SSGFQFPKPP LSSTSLKRKC NSTAFPHLKC GPSSSHCHCS KKRKLRLKRV IRVPAISSKT 180 ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERAVDDSN MLVVTYEGDH 240 NHSLTAPEVA STVLQSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 172 | 244 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_29780 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234167.1 | 0.0 | probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 1e-78 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A151S0N6 | 0.0 | A0A151S0N6_CAJCA; Putative WRKY transcription factor 7 | ||||
STRING | XP_006473278.1 | 7e-90 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24240.1 | 1e-53 | WRKY DNA-binding protein 7 |