PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_29262 | ||||||||
Common Name | KK1_033126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | CO-like | ||||||||
Protein Properties | Length: 411aa MW: 44814.2 Da PI: 4.9252 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.1 | 1.1e-05 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++++ +C+++ +lC +C + H+ H++ C.cajan_29262 5 CDFCGDQRSLVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 *****************************65677777766 PP | |||||||
2 | zf-B_box | 22.1 | 3.2e-07 | 46 | 88 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C++++++++ C + + lC++C +H g H++++ C.cajan_29262 46 LLCERCNSQPAFVRCVEEKISLCQNCDWLGH-GtspssaHKRQT 88 57*****************************.558889998876 PP | |||||||
3 | CCT | 64 | 4.4e-22 | 354 | 397 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R+RvKGrFvk+ C.cajan_29262 354 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAG 397 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.542 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.55E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 1.7E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.66 | 43 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.02E-4 | 47 | 89 | No hit | No description |
SMART | SM00336 | 1.4 | 48 | 89 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 8.5E-17 | 354 | 396 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.467 | 354 | 396 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MGYLCDFCGD QRSLVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPAFVRC 60 VEEKISLCQN CDWLGHGTSP SSAHKRQTIN CYNGCPSAAE FSSIWSFFLD IPSMGEACEQ 120 ELGLMSINEN SNKSAWVPPE GQNVSGSAQV ADLPSKDKSC AGTSSMPELS SEPRILDQPP 180 GPANECVPKL YCPGKKVSGI CEDDDLYDDF AMDEVDLELE HYEELFGMAL THSEELFENG 240 GIDSLFETKD MSASAGDSHC QGAVAAEGSS AGLVNAMQPA CSNAASADSM LSTKTEPIVC 300 FTARQSQSNI SFSGVTKDSA GDYQEDCGAS SMLLMGEPPW CPPCPESSLQ SANRSNAVMR 360 YKEKKKTRKF EKKVRYASRK ARADVRKRVK GRFVKAGEVY DYDPLSQTRS C |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_29262 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM068899 | 0.0 | HM068899.1 Glycine max CONSTANS-like zinc finger protein (COL18) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020236809.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_020236813.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_020236814.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_020236815.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-146 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A151RS06 | 0.0 | A0A151RS06_CAJCA; Zinc finger protein CONSTANS-LIKE 9 | ||||
STRING | GLYMA14G36930.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-119 | CONSTANS-like 9 |