PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_29028 | ||||||||
Common Name | KK1_027004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 15813.8 Da PI: 9.4565 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.7e-18 | 32 | 82 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y GVr ++ +g+++AeIrd + ng r++lg+f +ae Aa a+++a+ +++g+ C.cajan_29028 32 YIGVRKRP-WGKFAAEIRDTTRNG--SRVWLGTFESAEAAALAYDQAAFSMRGH 82 89******.**********54465..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.8E-35 | 31 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-30 | 31 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.221 | 31 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-13 | 31 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.85E-18 | 32 | 90 | No hit | No description |
SuperFamily | SSF54171 | 6.08E-22 | 32 | 91 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.7E-9 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-9 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MVDFSTPPTQ GNHNEPNQLV VKSEVQSKQR SYIGVRKRPW GKFAAEIRDT TRNGSRVWLG 60 TFESAEAAAL AYDQAAFSMR GHNAVLNFPV ERVKEKLSSK GKKCKGKETS TSSVMVLEDL 120 GVDYLEQLLT ISEHSSSPSY FN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-29 | 27 | 90 | 1 | 64 | ATERF1 |
3gcc_A | 9e-29 | 27 | 90 | 1 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_29028 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092200 | 1e-102 | BT092200.1 Soybean clone JCVI-FLGm-10G16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020231531.1 | 7e-79 | ethylene-responsive transcription factor 1B | ||||
Swissprot | A0A3Q7I5Y9 | 1e-39 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A151S8P6 | 1e-102 | A0A151S8P6_CAJCA; Ethylene-responsive transcription factor 1B | ||||
STRING | GLYMA13G18350.1 | 3e-63 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 8e-27 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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