PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_28926 | ||||||||
Common Name | KK1_029645 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HSF | ||||||||
Protein Properties | Length: 244aa MW: 27398 Da PI: 10.0863 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.5 | 6e-35 | 25 | 115 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y++++d++ ++lisw+e+g+sf+v + ef++++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF++++F++gk+ ll++i C.cajan_28926 25 FLTKTYQLVDDPAADDLISWNEDGTSFIVRRPAEFTRDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDYFRRGKRGLLRDI 111 9*****************************************************************99.........******************* PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k C.cajan_28926 112 QRQK 115 **87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.5E-38 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.2E-57 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.94E-34 | 22 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.4E-32 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-21 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-21 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-21 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAPLPAEQTG ELAPSESQRS IPTPFLTKTY QLVDDPAADD LISWNEDGTS FIVRRPAEFT 60 RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDYF RRGKRGLLRD IQRQKILPVP 120 AAATVTTANA VTVAVAAPAV RTVSPTTSSD EQVLSSNSSP IDGSGNNNNT VHRTTSCTTA 180 AELLEENERL RKKRGSEKVK PNNCIDRITR ICMIEVNQKA SRRCHEDSMS KKKTLKVTKP 240 PYQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-24 | 25 | 114 | 20 | 120 | Heat shock factor protein 1 |
5d5u_B | 2e-24 | 12 | 114 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 12 | 114 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 12 | 114 | 16 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_28926 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN896305 | 1e-160 | JN896305.1 Glycine max heat shock transcription factor HSFB2b mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029130305.1 | 0.0 | heat stress transcription factor B-2b-like | ||||
Swissprot | Q9T0D3 | 6e-67 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A151S1P0 | 0.0 | A0A151S1P0_CAJCA; Heat stress transcription factor B-2b | ||||
STRING | XP_007158472.1 | 1e-112 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 1e-59 | HSF family protein |
Publications ? help Back to Top | |||
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