PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_28722 | ||||||||
Common Name | KK1_030124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 376aa MW: 41446.1 Da PI: 9.8811 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 89.4 | 7.7e-28 | 51 | 120 | 3 | 72 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k i++l+ +++++ + C.cajan_28722 51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLQFPQGFA 120 79*************************************************************5555422 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-26 | 52 | 164 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.287 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MIIMSSSRED SQAKQEGDTN SIKFSKASST TSRQWSAFRN PRIVRVSRSF GGKDRHSKVC 60 TIRGLRDRRI RLSVPTAIQL YDLQDKLGLS QPSKVIDWLL EATKFDIDKL PPLQFPQGFA 120 QFHHPQTLLP FHGSSAASQL SLGPLCDASS TLVRDGGIQN LMAKSRYWEN MDSISRLKGK 180 EAEKGKWIKT NEQENQDGYN DLQVSTQRLF PMGSSATTTH SLLPGLLNNT MSYNSYNSEP 240 SSLSLSQFGS HGFFPSQQVD PNNPSNGNGV QFPSSLPLPP SGSQFLFGSS SATPSIFTTY 300 ASFTTPSVDN DPRQFNHIQF LNSGSQLLPH HPLIPSLHSF NSPVRPFPAT PFSSKLLASD 360 SNNDNSRSQQ DKGSTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-17 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-17 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_28722 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234240.1 | 0.0 | transcription factor TCP5 | ||||
Refseq | XP_020234241.1 | 0.0 | transcription factor TCP5 | ||||
TrEMBL | A0A151S0B6 | 0.0 | A0A151S0B6_CAJCA; Transcription factor TCP5 | ||||
STRING | GLYMA04G32324.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 5e-55 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |