PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28641
Common NameKK1_028176
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 617aa    MW: 67440.3 Da    PI: 7.9062
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28641genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32.1e-11931365499
                    EETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  54 kksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    +++g+++lt+GW++Fv++++L +gD++vF +   +++ l+v+++r+
  C.cajan_28641  93 NNGGGHLLTTGWSSFVNQKKLVAGDSIVFLR--ADNGDLCVGIRRA 136
                    77889*************************3..478888****996 PP
2Auxin_resp110.71.5e-36194275383
     Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ +++FevvY+Prast+eF+++++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ ldp+rWpnS+Wr+L+
  C.cajan_28641 194 MLAAGNQAFEVVYYPRASTPEFCIRTSAVRAALRIQWCSGMRFKMPFETEDSSRISWfMGTIASVQLLDPIRWPNSPWRLLQ 275
                    5678899*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.9E-993136IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-1293138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-1093138IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-793135No hitNo description
PROSITE profilePS508639.248100137IPR003340B3 DNA binding domain
PfamPF065072.0E-31194275IPR010525Auxin response factor
PROSITE profilePS5174519.125506586IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MKETDKTLDP QLWHACAGAM VQMPPVNSKV FYFPQGHAEH AHSNVDFTSS PLRVPPLILC  60
RVAAVTFLAD PDTDEASEKP ASFAKTLTQS DANNGGGHLL TTGWSSFVNQ KKLVAGDSIV  120
FLRADNGDLC VGIRRAKRGG VGGPEVGSGW SGGGGGGLGP YGAFCAFLRE ESKGARNGSG  180
RPKVSAESVR EAIMLAAGNQ AFEVVYYPRA STPEFCIRTS AVRAALRIQW CSGMRFKMPF  240
ETEDSSRISW FMGTIASVQL LDPIRWPNSP WRLLQVTWDE PDLLHNVKRV SPWLVELVSN  300
VPIIHLAPFS PPRKKLRFPQ HPEFPLDVQF PIPTFSGNPL GSSASSPLCC LSDNAPAGIQ  360
GARHAQIGIS LSDLHLNLNH KQLQLGFLPT NFRQLDLHTG ISNGNITNHG KSRESLSCLL  420
TMGNSNKSLE KSDHVKRHQF LLFGQPILTE QQIARKSSSD VLSQNCTATD DENKEKGFLS  480
DSQSSVSPGK SSSTAEFSWQ LGSDTSSHCK VFMESEDVGR TLDLSCLGSY EELYMRLANM  540
FGIQRSEMLS HVLYRDATGA LKQTGEEPFS EFMKTAKRLT ILTDSSSKDR RVWITGTRNA  600
EHGLDASNKT GPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-40729650388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28641
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232609.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A151S5K50.0A0A151S5K5_CAJCA; Auxin response factor
STRINGGLYMA12G29720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]