PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_27981

Common Name

KK1_028475

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YB

Protein Properties

Length: 185aa MW: 20904.7 Da PI: 4.6934

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_27981	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	111.8	3.8e-35	1	89	8	96
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +Pi+nv++i +++lP+nak+s+ ake++q+ ++++i+fvt +a ++cq e rk +n +d+lwa+ +lGf+dyv pl+++l++yr+++g+ C.cajan_27981 1 MPITNVTKITRRILPNNAKLSDSAKEMIQQSATKYITFVTRKAKERCQSEYRKIMNVEDVLWAMEKLGFHDYVRPLNIFLQRYRDIDGA 89 8************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.26E-24	1	87	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.9E-32	1	87	IPR009072	Histone-fold
Pfam	PF00808	7.4E-16	1	64	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	9.8E-11	28	46	No hit	No description
PRINTS	PR00615	9.8E-11	47	65	No hit	No description
PRINTS	PR00615	9.8E-11	66	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MPITNVTKIT RRILPNNAKL SDSAKEMIQQ SATKYITFVT RKAKERCQSE YRKIMNVEDV 60 LWAMEKLGFH DYVRPLNIFL QRYRDIDGAD YFAHTVDPTP CTDNNNGPSF GVEPNLVPTM 120 EMLHAPLPPP VPSSGSNFSM DPNTNMEIFD PNDVNELYLE GLGVDCSDGA FTNFSPSALF 180 KYDQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	8e-33	1	85	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_27981

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029130156.1	1e-137	nuclear transcription factor Y subunit B-2
TrEMBL	A0A151S4P3	1e-136	A0A151S4P3_CAJCA; Nuclear transcription factor Y subunit B-6
STRING	GLYMA07G29695.1	4e-58	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	1e-35	nuclear factor Y, subunit B6