PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_27725

Common Name

Dof37, KK1_031194

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 442aa MW: 48416.6 Da PI: 5.8453

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_27725	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	129	189	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s C.cajan_27725 129 PDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 189 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	126	186	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	131	187	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	133	187	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	135	171	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MQETKDPAIK LFGQKIPFPG GADAPLIAAA ESPSPPLMDV DGEDDFDFAD SEAEEDKHQD 60 PGAETISEKT KEVDPPPNGG EDSNKSPEGI QKPNTPSIDE ESQSAKSKSE NKSENDPNNN 120 NNNKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRYFC KACQRYWTAG GTMRNVPVGA 180 GRRKNKNSAS HYRHITISEA LQAARIESPN VPTLKTNGRV LSFGLDPPIC DSMASVLNLA 240 ENNTRNGFHN HAVEDQRNKE DDCSSASSIT VSNEESGKST SQESIMVQNI NSNGFIPHVP 300 CVSTVPWPYP WNNGAPALCP PGFPMSFYPA AAFWNIPWFP SHSPTLGKHS REDDVAKEDP 360 LRQRNGSSVL VPKTLRIDDP SEAAKSSIWA TLGIKNECVS GGGMFKGFQS KKDEKNHVVE 420 TSPVLRANPA ALSRSLNFHE NS

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MQETKDPAIK LFGQKIPFPG GADAPLIAAA ESPSPPLMDV DGEDDFDFAD SEAEEDKHQD  60
PGAETISEKT KEVDPPPNGG EDSNKSPEGI QKPNTPSIDE ESQSAKSKSE NKSENDPNNN  120
NNNKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRYFC KACQRYWTAG GTMRNVPVGA  180
GRRKNKNSAS HYRHITISEA LQAARIESPN VPTLKTNGRV LSFGLDPPIC DSMASVLNLA  240
ENNTRNGFHN HAVEDQRNKE DDCSSASSIT VSNEESGKST SQESIMVQNI NSNGFIPHVP  300
CVSTVPWPYP WNNGAPALCP PGFPMSFYPA AAFWNIPWFP SHSPTLGKHS REDDVAKEDP  360
LRQRNGSSVL VPKTLRIDDP SEAAKSSIWA TLGIKNECVS GGGMFKGFQS KKDEKNHVVE  420
TSPVLRANPA ALSRSLNFHE NS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_27725

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020235234.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-120	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A0K8K5X8	0.0	A0A0K8K5X8_CAJCA; Dof protein
STRING	GLYMA04G33410.2	0.0	(Glycine max)
STRING	GLYMA06G20950.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-110	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]