PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_27701 | ||||||||
Common Name | KK1_027748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GRAS | ||||||||
Protein Properties | Length: 507aa MW: 56240.6 Da PI: 4.7298 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 237 | 8.4e-73 | 114 | 495 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++lL cA a++ g+ +++q+lL l+elasp+gd+++Rlaa+ ++AL ++l++s++++ + + + +s ++ ++l f+evsP++ f + + C.cajan_27701 114 EQLLNPCAAAITGGNVNRVQHLLYVLHELASPTGDANHRLAAHGLKALTQHLSSSTTSVTTSGSITFAS-TEPRFFQKSLLKFYEVSPWFSFPNNI 208 689***************************************************888888777666665.344555555556************** PP GRAS 98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg............skeeleetgerLakfAeelgvpf 176 aN Il+ + ++ +++Hi+ +++s+G+QWp+Ll+aL+ Rp ++pp +R+T+v +++++ + + L fA+ ++v++ C.cajan_27701 209 ANASILQVLGEDpnnsRTLHILEIGVSHGMQWPTLLEALSRRPgGPPPLVRLTVVTASSTEnndqnyidtpfsIGPPGDNFSSSLLGFAQFMNVNL 304 ********98877777999************************55566*******99887788888888777767778899999************ PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..n.sesFlerflealeyysalfd 269 ++n l +l++l+ ++ +++p+E +V+ +++lh+l +++++er+e+Lk++++++Pk v+++++++++ n ++F+++f++ +ey + ++d C.cajan_27701 305 QINRLDNCSLQTLNAQSVDTSPDEIFVVCAQFRLHQLN---HHTPDERSEFLKVLRNMEPKGVILSDNNMECccNcCGDFATGFSRRVEYLWRFLD 397 ****9777*****************************9...55555566********************9885431469***************** PP GRAS 270 sleakl.preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 s++a + +res+er+++E e+ +++++ a+ +e +ekW +r++e+GF ++e+a + ++llrk++ +++++ve+e++s+ l Wk C.cajan_27701 398 STSAAFkGRESDERRVME-----GEAAKALTNLRAM----NEGKEKWCARMKEVGFVGEVFGEDAIDGGRALLRKYDnNWEMKVEDENASVGLWWK 484 **6665145555555555.....5577777777776....88899********************************9999*************** PP GRAS 364 drpLvsvSaWr 374 ++p+ +++ W+ C.cajan_27701 485 GQPVSFCTLWK 495 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.373 | 87 | 474 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-70 | 114 | 495 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MIMEPNSTSD HTLDWFEGPV SFFPLPPFLD DPYNSSDIQE YQLWDEDITS HYQTDANTNS 60 PNATNIDTST PLEPCGSNNL PLSDLAKKRS ATDESSGAKG VGNNCNNKEG RWAEQLLNPC 120 AAAITGGNVN RVQHLLYVLH ELASPTGDAN HRLAAHGLKA LTQHLSSSTT SVTTSGSITF 180 ASTEPRFFQK SLLKFYEVSP WFSFPNNIAN ASILQVLGED PNNSRTLHIL EIGVSHGMQW 240 PTLLEALSRR PGGPPPLVRL TVVTASSTEN NDQNYIDTPF SIGPPGDNFS SSLLGFAQFM 300 NVNLQINRLD NCSLQTLNAQ SVDTSPDEIF VVCAQFRLHQ LNHHTPDERS EFLKVLRNME 360 PKGVILSDNN MECCCNCCGD FATGFSRRVE YLWRFLDSTS AAFKGRESDE RRVMEGEAAK 420 ALTNLRAMNE GKEKWCARMK EVGFVGEVFG EDAIDGGRAL LRKYDNNWEM KVEDENASVG 480 LWWKGQPVSF CTLWKLDGND QSSTFTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 4e-41 | 110 | 495 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 4e-41 | 110 | 495 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_27701 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020232189.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A151S6R5 | 0.0 | A0A151S6R5_CAJCA; Nodulation-signaling pathway 1 protein | ||||
STRING | XP_007135437.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-152 | GRAS family protein |
Publications ? help Back to Top | |||
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