PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_27606
Common NameKK1_028977
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 303aa    MW: 34299.8 Da    PI: 6.1134
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_27606genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.6e-34201112102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    F+ k+y++++d+++++li+w  ++nsfvvld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i
  C.cajan_27606  20 FVIKTYNMVNDPTTDKLITWGPHNNSFVVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKHLLRNI 106
                    9********************999*****************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                     r+k+
  C.cajan_27606 107 VRRKH 111
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-5516109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3317109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-3717109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMEHNIIVNT NANNNVIAPF VIKTYNMVND PTTDKLITWG PHNNSFVVLD PLDFSHSLLP  60
AFFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEWFLRGQK HLLRNIVRRK HGGGRSNSHP  120
LKVEELDDEA MVMEIARLKE EQKALEQELQ GMNKRLETTE KRPQQMMAFL CKVVEDPQVL  180
SRMLKEREKK HIGDKRRRLI PPPLTAAPAT TSSSSSSGVK TEFEEDEGNY MMSSSPETGF  240
EIDYNNSNNY GYDCAAMPAP LTVVSPEAAM GGGYVGRGEF FGEMAAEGNT LPPYPFSLLE  300
GGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-251710926129Heat shock factor protein 1
5d5v_B8e-251710926129Heat shock factor protein 1
5d5v_D8e-251710926129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_27606
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233244.10.0heat stress transcription factor C-1
SwissprotQ6EUG49e-67HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A151S3G80.0A0A151S3G8_CAJCA; Heat stress transcription factor C-2a
STRINGXP_007152829.11e-171(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-76heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]