PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_27184
Common NameKK1_030229
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 544aa    MW: 61043.9 Da    PI: 6.3887
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_27184genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS461.16.5e-1411745441374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++ L++cA+av+++dl +aq+l+ +l++++s +gdp+qRl ay++e+L arla s+s++yk+l+++e +   s+e l+++++++ev+P++kf+++
  C.cajan_27184 174 LRHILISCANAVADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYKSLRCKEPE---SAELLSYMHILYEVCPYFKFGYM 266
                    689******************************************************************9...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef++ +a +  d++
  C.cajan_27184 267 SANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVGRRLSKLAEHFKVPFEFHA-AAISGCDVK 361
                    *****************************************************998899999************************.88899**** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    l++L v+pgEalaVn++++lh+++desvs++++rd++L+lv+slsPkvv++veqe+++n++ F+ rfle+leyy+a+f+s++++lpr+++eri+vE
  C.cajan_27184 362 LHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTSAFFPRFLETLEYYTAMFESIDVTLPRDHKERINVE 457
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++l+r++vn++acegaer+erhe l+kWr+r+++aGF+p+pls+ ++ ++k ll++++++ yr+ e++g+l+lgW++r+Lv+ +aW+
  C.cajan_27184 458 QHCLARDLVNIIACEGAERVERHELLGKWRSRFTMAGFTPYPLSSLVNGTIKKLLENYSDR-YRLVERDGALYLGWMNRNLVASCAWK 544
                    ***********************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098571.384148525IPR005202Transcription factor GRAS
PfamPF035142.3E-138174544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MQASEQHRSS SMYYQPLQQQ IETYCLPQYR TLNQQLYYHD GGHGTHFSTP SSSELYCTLE  60
SSSVCGSFTL YNSPSTVSFS PNGSPISQQD SHSYPADQYH SPENTYGSPM SGSCITDDLS  120
SFKHKLRELE SVMLGPDSDN LDSYDSAISN GVNFASLETD SWRQTMVAIS SKNLRHILIS  180
CANAVADNDL LMAQWLMDEL RQMVSVSGDP IQRLGAYMLE GLVARLAASG SSIYKSLRCK  240
EPESAELLSY MHILYEVCPY FKFGYMSANG AIAEAMKDED RVHIIDFQIA QGSQWITLIQ  300
AFAARPGGPP HIRITGIDDS TSAYARGGGL HIVGRRLSKL AEHFKVPFEF HAAAISGCDV  360
KLHNLGVRPG EALAVNFAFM LHHMPDESVS TQNHRDRLLR LVRSLSPKVV TLVEQESNTN  420
TSAFFPRFLE TLEYYTAMFE SIDVTLPRDH KERINVEQHC LARDLVNIIA CEGAERVERH  480
ELLGKWRSRF TMAGFTPYPL SSLVNGTIKK LLENYSDRYR LVERDGALYL GWMNRNLVAS  540
CAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6218154325377Protein SCARECROW
5b3h_D6e-6218154325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_27184
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234361.10.0scarecrow-like transcription factor PAT1
RefseqXP_029130396.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A151S0260.0A0A151S026_CAJCA; Scarecrow-like transcription factor PAT1
STRINGXP_007142502.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]