PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_26984
Common NameKK1_028355
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 542aa    MW: 61170.1 Da    PI: 5.0964
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_26984genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.35.6e-1341725421374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l+e L++cA+a++ +d+e +++l+++l++++s +g+pmqRl ay++e L ar++ s+s++yk+l++se +     e l+++++++e++P++kf+++
  C.cajan_26984 172 LKEMLYTCARAMAVNDMETTEWLMSELRKMVSISGNPMQRLGAYMLESLVARMSASGSTIYKSLKCSEPT---GNELLSYMHVLYEICPYFKFGYM 264
                    5789*****************************************************************9...99********************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI ea+++e++vHiiDf+isqG+QW++L+qaLa Rp+gpp++Ri gv+++ s+  +   l  +g+rL+ +Ae+++vpfefn+ v    ++++
  C.cajan_26984 265 SANGAIAEALKEENEVHIIDFQISQGTQWVSLIQALARRPGGPPKIRISGVDDSFSSyaRGGGLDIVGKRLSALAESCHVPFEFNA-VRVPASQVQ 359
                    *****************************************************776688999************************.7999***** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    le+L+++p EalaVn++++lh+++desv+++++rd++L+l k+lsPkvv++veqe ++n+++Fl+rf+e+++yy a+f+s++a lpre++eri+vE
  C.cajan_26984 360 LEDLELRPYEALAVNFSIMLHHVPDESVNSHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNTPFLQRFVETMNYYLAIFESVDAVLPREHKERINVE 455
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++l+re+vn++aceg+er+erhe l+kWr+r+++aGF+p+pls+ +++++k ll+ ++++ y++ee++g+l+lgW+++ L++ +aWr
  C.cajan_26984 456 QHCLAREVVNLIACEGEERVERHELLNKWRKRFTMAGFTPYPLSSVINSSIKDLLQSYHGH-YTLEERDGALFLGWMNQVLIASCAWR 542
                    ***********************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.269146523IPR005202Transcription factor GRAS
PfamPF035142.0E-131172542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQTSQNHKFS YGSGGFYVEP VQNLESYCVP SSENLDNYCS SDNSSQTTYP SVQTLEQYCT  60
LESASTSNSF PCQNSPSAPS FSSNNSPVSK SYVLRPQHSL EIVNGSPEDD SYLTHDLDDL  120
THKIRELETA MLGPNANMLD IYDAVIPEEP DSLLLEAEKW KKLMEMASRG DLKEMLYTCA  180
RAMAVNDMET TEWLMSELRK MVSISGNPMQ RLGAYMLESL VARMSASGST IYKSLKCSEP  240
TGNELLSYMH VLYEICPYFK FGYMSANGAI AEALKEENEV HIIDFQISQG TQWVSLIQAL  300
ARRPGGPPKI RISGVDDSFS SYARGGGLDI VGKRLSALAE SCHVPFEFNA VRVPASQVQL  360
EDLELRPYEA LAVNFSIMLH HVPDESVNSH NHRDRLLRLA KHLSPKVVTL VEQEFNTNNT  420
PFLQRFVETM NYYLAIFESV DAVLPREHKE RINVEQHCLA REVVNLIACE GEERVERHEL  480
LNKWRKRFTM AGFTPYPLSS VINSSIKDLL QSYHGHYTLE ERDGALFLGW MNQVLIASCA  540
WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-591765428375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_26984
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232754.10.0scarecrow-like protein 21
RefseqXP_020232755.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A151S4X10.0A0A151S4X1_CAJCA; Scarecrow-like protein 5
STRINGGLYMA18G09030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]