PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_26961 | ||||||||
Common Name | KK1_029744 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 27422.4 Da PI: 9.1048 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.5 | 2e-31 | 51 | 137 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pk++ae+h + ++ ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++ C.cajan_26961 51 FEKALTPSDVGKLNRLVIPKQHAEKHfplE-SSSKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLNAGDVVLFHRH 137 99*************************973.3357789***********************************************954 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-40 | 43 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-31 | 48 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-28 | 50 | 138 | No hit | No description |
PROSITE profile | PS50863 | 14.17 | 51 | 150 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-23 | 51 | 150 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-28 | 51 | 137 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MSINQYSCWN QQQQQQQQAA TWVADSNSPR FNLNKEEVVA AEQEEEKEAM FEKALTPSDV 60 GKLNRLVIPK QHAEKHFPLE SSSKGLLLSF EDESGKCWRF RYSYWNSSQS YVLTKGWSRY 120 VKDKRLNAGD VVLFHRHRIH PHRFFISSTP RQTPPSYPHS HSLGGGSQAQ AQAQGQKETT 180 AASSGRVLRL FGVNMECQPQ PQPHHDSQNS TPQCSYSFSP YSSSNPHPRH HMLHQQQPY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-47 | 46 | 136 | 3 | 95 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-47 | 46 | 136 | 3 | 95 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_26961 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 5e-66 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020233899.1 | 1e-180 | B3 domain-containing protein At2g36080 | ||||
Swissprot | Q8GYJ2 | 8e-60 | Y2608_ARATH; B3 domain-containing protein At2g36080 | ||||
TrEMBL | A0A151S1A8 | 1e-178 | A0A151S1A8_CAJCA; B3 domain-containing protein At2g36080 family | ||||
STRING | GLYMA19G38340.2 | 3e-91 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5739 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06250.1 | 7e-45 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|