PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_26485
Common NameKK1_028844
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 327aa    MW: 36878.4 Da    PI: 8.3453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_26485genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-05167186120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    + Cp C k+F+r  n++ H+
  C.cajan_26485 167 FACPLCFKTFNRYNNMQMHM 186
                    78*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5167186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.619167194IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
SuperFamilySSF576672.99E-5233271No hitNo description
Gene3DG3DSA:3.30.160.602.1E-4237271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTNSYTSNDL NFWLDLNSPC LLTSPSPSSP SKSTPPFYFH NHTSTSISST QFKPSPQRKA  60
LPLFHPRHAE EEDLESSFSA MEVDKKKKEP STSSSCLDEE DSVVLHLGLP STSASASADL  120
ASSIYSTEAS HKEEKVTDAS SLLSNRINRG QYWIPTSSQI LIGPTQFACP LCFKTFNRYN  180
NMQMHMWGHG SQYRKGPESL RGTQPTAMLR LPCYCCAPGC KNNIDHPRAK PLKDFRTLQT  240
HYKRKHGTKP FVCRKCCKTF AVRGDWRTHE KNCGKRWYCS CGSDFKHKRS LKDHIKAFGY  300
GHTAYGNDCC NLDHDDDLAG SEIEQEN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_26485
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-180AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233185.10.0zinc finger protein WIP2
SwissprotQ8W0311e-116ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A151S3J20.0A0A151S3J2_CAJCA; Protein TRANSPARENT TESTA 1
STRINGXP_007132003.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-113C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]