PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_26439

Common Name

KK1_026407

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SRS

Protein Properties

Length: 304aa MW: 32090.1 Da PI: 6.8236

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_26439	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	210.4	4.7e-65	79	245	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 s +++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq ++ +a+ ++ +++ +k+ r s++++++++++ +++++++ C.cajan_26439 79 SAGSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAVTAAVGST--GSTSGAKKARIVASQTTTTSHTSTSNNTTPPR 172 56789*******************************************877766655554..46677777887755666665556666777889 PP DUF702 99 eletss.................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++t s lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG+e+ C.cajan_26439 173 SFDTGSshqgfvescadvgfkesLPCQVRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGTEA 245 99998899************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-60	81	244	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.6E-27	83	125	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.3E-29	196	242	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MWPGASRSFN YNLAPHHDIY VVAPASSFHH HNDAVLSDPN NGSGTNSTAL GVNVIQLWQD 60 QESPPPQQQQ HVEHEASGSA GSTCQDCGNQ AKKDCSHRRC RTCCKSRGFD CATHVKSTWV 120 PAARRRERQL MAVTAAVGST GSTSGAKKAR IVASQTTTTS HTSTSNNTTP PRSFDTGSSH 180 QGFVESCADV GFKESLPCQV RAPAVFKCVR VTAVDDGEDE YAYQAVVKIG GHVFKGFLYD 240 QGTEAEDKEG YPNISELHLG GNVATASDGG GGRNGSPMLD PSEVYAASGG GLLGGSSNYG 300 NPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_26439

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-94	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020231051.2	1e-177	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-76	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A151SAF2	0.0	A0A151SAF2_CAJCA; Uncharacterized protein
STRING	XP_007146319.1	1e-146	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-72	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]