PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_26112 | ||||||||
Common Name | KK1_027099 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 136aa MW: 15119.2 Da PI: 8.6133 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.7 | 1.7e-14 | 21 | 63 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 ++y GVr + +gr++AeIr p++ + r++lg+f+t eAa a++ C.cajan_26112 21 TKYLGVRKRA-WGRYAAEIRNPYT---KERHWLGTFDT-AEAAIAYDI 63 699****887.**********865...5**********.*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-8 | 21 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-22 | 22 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.764 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-14 | 22 | 80 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.52E-23 | 22 | 78 | No hit | No description |
SMART | SM00380 | 6.9E-22 | 22 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MENLRPLIYK SPTRRSSRRS TKYLGVRKRA WGRYAAEIRN PYTKERHWLG TFDTAEAAIA 60 YDISSINICG IINARTNFHY PFLSLPPPPP PPPPTPGLDP SVGGCPEMNG VYEGDDECLV 120 IASILQSFSN SGNCSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_26112 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011810 | 7e-76 | AP011810.1 Glycine max DNA, BAC clone: MiB039C03, complete sequence. | |||
GenBank | AP011813 | 7e-76 | AP011813.1 Glycine max DNA, BAC clone: MiB319A04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020231638.1 | 3e-97 | ethylene-responsive transcription factor LEP | ||||
Swissprot | Q3E703 | 7e-24 | ERF88_ARATH; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | A0A151S8G2 | 7e-96 | A0A151S8G2_CAJCA; Ethylene-responsive transcription factor ERF088 family | ||||
STRING | XP_007143615.1 | 7e-66 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14513 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 2e-25 | ERF family protein |