PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_26002
Common NameKK1_026729
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family AP2
Protein Properties Length: 355aa    MW: 40764 Da    PI: 6.5139
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_26002genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.7e-123894155
            AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                   s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  C.cajan_26002 38 SIYRGVTRHRWTGRYEAHLWDkHCWNEsQNKKGRQGAYDNEEAAAHAYDLAALKYWG 94
                   57***********************9998888888********************98 PP
2AP251.72.2e-16137188155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  C.cajan_26002 137 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDLAAIEYRG 188
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-83894IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1538104IPR016177DNA-binding domain
PROSITE profilePS5103218.54539102IPR001471AP2/ERF domain
SMARTSM003806.0E-1939108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-1339103IPR001471AP2/ERF domain
PRINTSPR003675.2E-64051IPR001471AP2/ERF domain
PfamPF008471.4E-12137188IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18137198IPR016177DNA-binding domain
CDDcd000188.73E-25137198No hitNo description
SMARTSM003804.8E-25138202IPR001471AP2/ERF domain
PROSITE profilePS5103218.386138196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-18138197IPR001471AP2/ERF domain
PRINTSPR003675.2E-6178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAQKSQKNNG NINPNTVITK VKRTRRSVPR DSPPQRSSIY RGVTRHRWTG RYEAHLWDKH  60
CWNESQNKKG RQGAYDNEEA AAHAYDLAAL KYWGQETILN FPLSNYLNEL KEMGSQSREE  120
YIGSLRRKSS GFSRGISKYR GVARHHHNGR WEARIGKVFG NKYLYLGTYA TQEEAATAYD  180
LAAIEYRGLN AVTNFDLSRY IKWLKPNNIS NNNSDQININ INLTDINHNC SSNFTPNPNQ  240
EQELGLLHQD SLINNIVEEA ATLVPHQPRQ AGATSALELL LQSSKFKEML EMTSVGNVST  300
TQVESDELPQ CTFPDHIQTY FEYEDSNRYE EGDDVMFNEF SSIVPFYHCD DEFES
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_26002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029129931.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-102AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A151S9H00.0A0A151S9H0_CAJCA; AP2-like ethylene-responsive transcription factor At1g16060 family
STRINGXP_007154853.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-93ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]