PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_25877

Common Name

Dof1, KK1_027462

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 373aa MW: 40187.9 Da PI: 9.7027

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_25877	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	75	135	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprC+stntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ C.cajan_25877 75 PDAALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 135 68899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	59	124	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	77	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.702	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MVFPSLPIYL DPPNWSQQQP NHPEGIGNQD PRIPPPLSPL PPSTVAAEVG GGGYQGSIRP 60 GSMADRARMA KLHQPDAALK CPRCESTNTK FCYYNNYSLS QPRHFCKTCR RYWTRGGALR 120 NVPVGGGCRR NKRSKGRSGR SKSPMKPATG SNSASANSSS SGCTNDHHNV MMAHMPTPTP 180 TQFPFLTSLH HYNSDYVSGG IGSHFGVTPT TPLVARNGNT SNNNVEFQIG TSSALGNSGG 240 GAMLLSSNGL GEQWRLNNLQ QVQHQQFPFL SSTNLEPQIG VFQFGGENNN GEPPSYAKDG 300 GRFNIRSKMD SISSVSGIMP QQINTIKLEE SQGLSLPKTL LMMSSSGNDA LWNGSGNAWS 360 EVPSFTPSPN HLL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MVFPSLPIYL DPPNWSQQQP NHPEGIGNQD PRIPPPLSPL PPSTVAAEVG GGGYQGSIRP  60
GSMADRARMA KLHQPDAALK CPRCESTNTK FCYYNNYSLS QPRHFCKTCR RYWTRGGALR  120
NVPVGGGCRR NKRSKGRSGR SKSPMKPATG SNSASANSSS SGCTNDHHNV MMAHMPTPTP  180
TQFPFLTSLH HYNSDYVSGG IGSHFGVTPT TPLVARNGNT SNNNVEFQIG TSSALGNSGG  240
GAMLLSSNGL GEQWRLNNLQ QVQHQQFPFL SSTNLEPQIG VFQFGGENNN GEPPSYAKDG  300
GRFNIRSKMD SISSVSGIMP QQINTIKLEE SQGLSLPKTL LMMSSSGNDA LWNGSGNAWS  360
EVPSFTPSPN HLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_25877

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020231937.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A0K8K634	0.0	A0A0K8K634_CAJCA; Dof protein
STRING	GLYMA02G10250.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-38	DNA binding with one finger 2.4

Publications ? help Back to Top
Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821]