PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_25600 | ||||||||
Common Name | KK1_026361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 175aa MW: 18570 Da PI: 4.8551 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.4e-05 | 150 | 172 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ s L++H + H C.cajan_25600 150 SCKSCSKTFTSESGLQQHSKAkH 172 7*****************98777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 12.113 | 149 | 175 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 151 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MLGKPEKKAE DLKVPESKKP EAKVAASAKQ VKVVDPKKDD EEDSDDDSDE DGDFDSSDEE 60 MGDADGDSDE ESDSDEDDDE ETPKKVDLGK KRPNESASKT PVSKKAKNAT PEKTDGKKGG 120 HQATPHPVKK GGKTPNSGAK DKSPKSGGLS CKSCSKTFTS ESGLQQHSKA KHGGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_25600 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020230977.1 | 1e-113 | histone deacetylase HDT1 | ||||
Swissprot | Q8LJS2 | 3e-40 | HDT1_SOYBN; Histone deacetylase HDT1 | ||||
TrEMBL | A0A151SAK1 | 1e-115 | A0A151SAK1_CAJCA; Histone deacetylase HDT1 | ||||
STRING | GLYMA12G30600.1 | 1e-51 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 5e-09 | histone deacetylase 2C |