PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_25486

Common Name

KK1_025916

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C3H

Protein Properties

Length: 327aa MW: 35484.9 Da PI: 8.9032

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_25486	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1.1e-07	49	69	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f tG C++Gd C F+H C.cajan_25486 49 PCNNFVSTGSCSRGDACLFSH 69 7******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.817	1	17	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.638	19	43	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.095	19	45	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.042	44	72	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.098	47	71	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.33E-6	48	75	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	49	69	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-5	49	70	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGRCHEGDKC LFSHDVVPLT KSMACVHFAR HSCMKGDDCP FDHQLSKYPC NNFVSTGSCS 60 RGDACLFSHK VTTNEDIHKP SNVCKPGLKS PHLSGHANFS TPPNNHASSS VRQNHFTNSA 120 GIHSHLNDEC KVTDILHKQP TPPKGISFIN LAKLSPSLST LKQGAVTTKE IPVHTREDQT 180 ASDKTQNKVE IPKKLPAVTP KGVNFLSFGK GSASSSLNKD DHDKACDRTK QNVPQTDIFL 240 NEILEKKQSV ADGMKSKLSE KTLVNVSMRD HSHSKSVQEG KGSSNNSQSS NVTSATLPQR 300 ALLSTLAFAS EHESDIKMKY PTGGSSV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_25486

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235744	2e-35	AC235744.1 Glycine max strain Williams 82 clone GM_WBb0115C15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020230576.1	0.0	uncharacterized protein LOC109811292
TrEMBL	A0A151SBR6	0.0	A0A151SBR6_CAJCA; Zinc finger CCCH domain-containing protein 65
STRING	GLYMA14G39391.1	1e-154	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6650	23	23