PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_25450
Common NameKK1_026824
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TCP
Protein Properties Length: 392aa    MW: 42345.2 Da    PI: 7.3645
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_25450genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.35.6e-38421642112
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnss 86 
                    +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+ +           +++++++   es++ s+s+++
  C.cajan_25450  42 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDQLAHLppwkptlpthlNNTPQNDD--ESEKHSHSHNQ 135
                    79**************************************************************8877766655533333222..12222222222 PP

            TCP  87 sg..kaaksaa.kskksqksaasalnlak 112
                    ++  +++++    ++++++++++++n+++
  C.cajan_25450 136 NPnpNQNPDVGiLNHFNENDNQENQNVHQ 164
                    22333444444455555555555555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3442161IPR005333Transcription factor, TCP
PROSITE profilePS5136933.66844102IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
QQQRKRGFSA SVEHAGGTTS SRQGMVRGEI VEVEGGHIVR STGRKDRHSK VCTAKGPRDR  60
RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LINKAKSAID QLAHLPPWKP TLPTHLNNTP  120
QNDDESEKHS HSHNQNPNPN QNPDVGILNH FNENDNQENQ NVHQDGGGSG SGFLPLDNEA  180
IRSFFPTTTS SLIQFHNYPP DLLSRTSSQD LRLSLQSLQD PIMLHQSNNE HVLFAGFDNM  240
VAWNNAANDT GGGGGGGGGG GFVFNAPSPL QGPATVASPA VVFGQSHSHG HGHGHGQYLS  300
QRGPLQSSNS PSVRAWIDAP SFVAADYHHH HRHHYLSPAA AAAALVYQSS PSSAFAPPGG  360
FSGFRVPARI QGEEEHDGVS DKLSSASSDS RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2049102154Putative transcription factor PCF6
5zkt_B3e-2049102154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_25450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150402e-88AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231406.10.0transcription factor TCP4
TrEMBLA0A151S9H10.0A0A151S9H1_CAJCA; Transcription factor TCP3 (Fragment)
STRINGXP_007161598.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.16e-54TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3