PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_25450 | ||||||||
Common Name | KK1_026824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 392aa MW: 42345.2 Da PI: 7.3645 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.3 | 5.6e-38 | 42 | 164 | 2 | 112 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnss 86 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+ + +++++++ es++ s+s+++ C.cajan_25450 42 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDQLAHLppwkptlpthlNNTPQNDD--ESEKHSHSHNQ 135 79**************************************************************8877766655533333222..12222222222 PP TCP 87 sg..kaaksaa.kskksqksaasalnlak 112 ++ +++++ ++++++++++++n+++ C.cajan_25450 136 NPnpNQNPDVGiLNHFNENDNQENQNVHQ 164 22333444444455555555555555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-34 | 42 | 161 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.668 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
QQQRKRGFSA SVEHAGGTTS SRQGMVRGEI VEVEGGHIVR STGRKDRHSK VCTAKGPRDR 60 RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LINKAKSAID QLAHLPPWKP TLPTHLNNTP 120 QNDDESEKHS HSHNQNPNPN QNPDVGILNH FNENDNQENQ NVHQDGGGSG SGFLPLDNEA 180 IRSFFPTTTS SLIQFHNYPP DLLSRTSSQD LRLSLQSLQD PIMLHQSNNE HVLFAGFDNM 240 VAWNNAANDT GGGGGGGGGG GFVFNAPSPL QGPATVASPA VVFGQSHSHG HGHGHGQYLS 300 QRGPLQSSNS PSVRAWIDAP SFVAADYHHH HRHHYLSPAA AAAALVYQSS PSSAFAPPGG 360 FSGFRVPARI QGEEEHDGVS DKLSSASSDS RR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 49 | 102 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 49 | 102 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_25450 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 2e-88 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020231406.1 | 0.0 | transcription factor TCP4 | ||||
TrEMBL | A0A151S9H1 | 0.0 | A0A151S9H1_CAJCA; Transcription factor TCP3 (Fragment) | ||||
STRING | XP_007161598.1 | 1e-170 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 6e-54 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |