PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_25296

Common Name

KK1_025346

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB

Protein Properties

Length: 351aa MW: 40185 Da PI: 7.1036

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_25296	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l d++ ++G +tW+t + + g++R++k+c++rw +yl C.cajan_25296 14 KGPWTLEEDEKLMDYISKHGRRTWRTLPMHAGLNRCGKSCRLRWENYL 61 79********************************************97 PP
2	Myb_DNA-binding	58.2	1.9e-18	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++l+++++ lG++ W++Ia +++ gRt++++k++w++ C.cajan_25296 67 RGKFTEEEEQLIINLHSVLGNK-WAKIATHLP-GRTDNEIKNYWNT 110 89******************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.958	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.35E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.10E-9	16	61	No hit	No description
PROSITE profile	PS51294	28.566	62	116	IPR017930	Myb domain
SMART	SM00717	2.0E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-17	67	110	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-26	69	116	IPR009057	Homeodomain-like
CDD	cd00167	2.02E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGRPPCCNES GVKKGPWTLE EDEKLMDYIS KHGRRTWRTL PMHAGLNRCG KSCRLRWENY 60 LRPDIKRGKF TEEEEQLIIN LHSVLGNKWA KIATHLPGRT DNEIKNYWNT NIRKKLLQMG 120 IDPETHKQRT DFNHLMNLSQ LLGMSLGTSM SPWTNPLGLQ ADVNTQLAKL QLLQNMLQLV 180 NSTNSLVNMG NPYLFSNQIL NGTNTFQVED SIMREKESET NHEVLGYNQN INTLLQNEAE 240 NLLPALVATC PKKTTLSQMD NNFNAAQKST ESPFSTTFEA CEKFLLDDDE TNVSYWKEIL 300 EYVLLFSTGL IALLLLLCAN ACILFIEKRK KNICNFVFES NLTSSCFYFA V

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGRPPCCNES GVKKGPWTLE EDEKLMDYIS KHGRRTWRTL PMHAGLNRCG KSCRLRWENY  60
LRPDIKRGKF TEEEEQLIIN LHSVLGNKWA KIATHLPGRT DNEIKNYWNT NIRKKLLQMG  120
IDPETHKQRT DFNHLMNLSQ LLGMSLGTSM SPWTNPLGLQ ADVNTQLAKL QLLQNMLQLV  180
NSTNSLVNMG NPYLFSNQIL NGTNTFQVED SIMREKESET NHEVLGYNQN INTLLQNEAE  240
NLLPALVATC PKKTTLSQMD NNFNAAQKST ESPFSTTFEA CEKFLLDDDE TNVSYWKEIL  300
EYVLLFSTGL IALLLLLCAN ACILFIEKRK KNICNFVFES NLTSSCFYFA V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-33	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_25296

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235268	1e-122	AC235268.1 Glycine max strain Williams 82 clone GM_WBb0044I02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020229967.1	0.0	transcription factor MYB53
Swissprot	Q9S9Z2	5e-75	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A151SDL0	0.0	A0A151SDL0_CAJCA; Transcription factor MYB39
STRING	GLYMA16G13440.2	1e-156	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	2e-80	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]