PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_25098 | ||||||||
Common Name | KK1_025520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 23374.6 Da PI: 8.8347 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 79 | 133 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+ +++++ +++ LA++l+L+ rqV vWFqNrRa+ k C.cajan_25098 79 RKKLRLSKEQSAMLENSFKLHSTLNPVQKQALADQLNLKARQVEVWFQNRRARTK 133 677899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 111.6 | 5.3e-36 | 79 | 167 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+++LE+sF+ +++L+p +K++la +L+l++rqv+vWFqnrRARtk+kq+E+d e+Lk+++++l++en+rL++e +eLr + C.cajan_25098 79 RKKLRLSKEQSAMLENSFKLHSTLNPVQKQALADQLNLKARQVEVWFQNRRARTKLKQTEVDREFLKKHCQNLSDENRRLKRELQELR-A 167 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-18 | 57 | 133 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-18 | 64 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.439 | 75 | 135 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-16 | 77 | 139 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-15 | 79 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.08E-12 | 79 | 136 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 110 | 133 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.7E-17 | 135 | 178 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MENDEECITG LCLGLGMGGH VPKRAKHKEN KPVKCLDLAF ELCPKEEAMN VNHNIDSDNP 60 NEKSTDSDNS NNNNNSGCRK KLRLSKEQSA MLENSFKLHS TLNPVQKQAL ADQLNLKARQ 120 VEVWFQNRRA RTKLKQTEVD REFLKKHCQN LSDENRRLKR ELQELRALKV GPSQLCIQLS 180 KTTTLTMCSS CEKLGKNNIE LEGRN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 135 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_25098 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031169 | 1e-142 | KT031169.1 Glycine max clone HN_CCL_118 homeodomain/HOMEOBOX transcription factor (Glyma13g00310.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020230259.1 | 1e-148 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46602 | 3e-50 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
Swissprot | Q05466 | 2e-50 | HAT4_ARATH; Homeobox-leucine zipper protein HAT4 | ||||
TrEMBL | A0A151SCQ9 | 1e-147 | A0A151SCQ9_CAJCA; Homeobox-leucine zipper protein HAT3 | ||||
STRING | GLYMA13G00310.1 | 1e-96 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 1e-51 | homeobox protein 2 |