PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24710
Common NameKK1_025076
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 1195aa    MW: 133439 Da    PI: 8.1922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24710genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004610801105123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                     +kC    C +sF++k +L  H r+ +
  C.cajan_24710 1080 HKCDldGCRMSFKTKAELLLHKRNlC 1105
                     799999****************9876 PP
2zf-C2H2120.0006611631189123
                     EEET..TTTEEESSHHHHHHHHHH..T CS
        zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                     y+C+   Cg sF+  s++ rH r+  H
  C.cajan_24710 1163 YQCKveGCGLSFRFVSDFSRHRRKtgH 1189
                     99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.7E-141555IPR003349JmjN domain
PROSITE profilePS5118314.2291657IPR003349JmjN domain
PfamPF023751.4E-161750IPR003349JmjN domain
SuperFamilySSF511977.42E-26225391No hitNo description
PROSITE profilePS5118434.013225394IPR003347JmjC domain
SMARTSM005582.9E-45225394IPR003347JmjC domain
PfamPF023733.0E-36258377IPR003347JmjC domain
Gene3DG3DSA:3.30.160.603.9E-410721102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551110801102IPR015880Zinc finger, C2H2-like
SMARTSM003550.6711031127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0511031132IPR007087Zinc finger, C2H2
SuperFamilySSF576675.78E-611041140No hitNo description
PROSITE patternPS00028011051127IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-511101133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.94611331162IPR007087Zinc finger, C2H2
SMARTSM003550.001411331157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-1011341157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011351157IPR007087Zinc finger, C2H2
SuperFamilySSF576675.14E-1111431188No hitNo description
Gene3DG3DSA:3.30.160.601.6E-1111581186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.82411631194IPR007087Zinc finger, C2H2
SMARTSM003550.2311631189IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011651189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0032259Biological Processmethylation
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1195 aa     Download sequence    Send to blast
MGGVEIPNWL KGLPLAPVFR PTDTEFADPI AYISKIEKEA ANFGICKIIP PLPKPSKRYV  60
FSNLNRSLLK CPDLGPDSSS LGVCNSSKTS SGDSSSFGVS RAVFTTRHQE LGQSQSVKKS  120
KGAVQNPLSG VHKQVWQSGE AYTLEQFESK SKSFARSVLG PVKDVSPLVI ESLFWKASLD  180
KPIYVEYAND VPGSAFEESK DSHSQPSKEK GSDASNDMQG TAGWKLSNSP WNLQVIARSS  240
GSLTRFMPDD IPGVTSPMVY IGMLFSWFAW HVEDHELHSM NFLHTGSSKT WYAVPGDYAF  300
AFEEVIRTKG YGGNVDHLAA LKLLGEKTTL LSPEVIVASG IPCCRLTQNP GEFVVTFPRA  360
YHVGFSHGFN CGEAANFGTP QWLRVAKEAA VRRAAMNYLP MLSHQQLLYL LTMSFISRVP  420
RTLLPGVRSS RLRDRQKEER EILVKQAFIE DMLLENKLLS ILLGKEATKK AVLWNADLLP  480
DSSKDFQLPD LTSTTGTSVS DMSNISSAEK SSHYLLDEMS LYMDNLTYLD LGDDDLPCHF  540
QTDSGALACV GCGILGFPFM TVIQPTEKLT MELLPDNHLV HVSSPDSTAC IRDLSISELS  600
SVKVLPDQSL NMCSKYWNTS NFQKIKAHAS AVADEIHSAF DYNEVPLETA SSEYLTLIDR  660
AIDGEELDEC EDWTSKLGIN LQSCVHARNN PLSKQVPWTL GTLFYGKPPA SKILALNWQS  720
QRSRSKKSSR LAQTKPCDSI QRKNGDRLDG RIDDSTSEKK LIQYSRRKFK SKQRCFPVVS  780
MACDFQEKSK IVSAISSGDH YNCVSKNGLE AENFRSDCTL SFSHSKMHCN TSVSEIRRKE  840
SQDCQDKKYS SSLTNATDRN IEMIRKTENT EAVITRSECN SLSLYDEVHQ EYQSTCKSNN  900
DEAALSPASL VNHSTLASRD GSFENKEKEM KIQSINRIDE EHCSGTDALL KDSSLSIEEC  960
SETEKETCVR ENVNGIKADL SQNNRGQESC ELTTAVPRSN ARKKRKREVE HTAKGQSNCD  1020
NFIRSPCEGL RPRAGKNAGG KSGVEINQID KENQLAKRAR RSSEVLVPRK NKKDDVKRPH  1080
KCDLDGCRMS FKTKAELLLH KRNLCPHEGC GKKFSSHKYA LLHQRVHDDE RPLKCPWKGC  1140
SMTFKWAWAR TEHIRVHTGE KPYQCKVEGC GLSFRFVSDF SRHRRKTGHN VKAPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-7094088346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-7094088346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19961005PRSNARKKRK
210011006RKKRKR
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025674326.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A151SE220.0A0A151SE22_CAJCA; Lysine-specific demethylase lid
STRINGXP_004496256.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]