PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_24681 | ||||||||
Common Name | KK1_042049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 136aa MW: 15800.2 Da PI: 10.0878 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.3e-06 | 23 | 45 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H C.cajan_24681 23 FICEVCNKGFQREQNLQLHRRGH 45 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.1 | 6.4e-05 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ C.cajan_24681 99 WKCEKCSKKYAVQSDWKAHSKTC 121 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.2E-7 | 22 | 45 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.62E-8 | 22 | 45 | No hit | No description |
SMART | SM00355 | 0.0052 | 23 | 45 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 4.1E-6 | 23 | 45 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 23 | 45 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 64 | 94 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.2E-6 | 87 | 120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.62E-8 | 94 | 119 | No hit | No description |
SMART | SM00355 | 140 | 99 | 119 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
GAKDPDAEVI ELSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSTKEPK 60 RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT 120 CGTREYRCDC GTLFSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-23 | 95 | 136 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 4e-23 | 95 | 136 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_24681 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020229682.1 | 4e-95 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_020229683.1 | 4e-95 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_020229684.1 | 4e-95 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q8GYC1 | 5e-94 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A151SE43 | 7e-97 | A0A151SE43_CAJCA; Zinc finger protein MAGPIE (Fragment) | ||||
TrEMBL | A0A371EKS2 | 5e-96 | A0A371EKS2_MUCPR; Protein indeterminate-domain 4, chloroplastic (Fragment) | ||||
STRING | EOY01198 | 2e-93 | (Theobroma cacao) | ||||
STRING | XP_008460216.1 | 3e-93 | (Cucumis melo) | ||||
STRING | XP_004140400.1 | 3e-93 | (Cucumis sativus) | ||||
STRING | XP_004157851.1 | 3e-93 | (Cucumis sativus) | ||||
STRING | XP_007143766.1 | 2e-93 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 4e-84 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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