PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24651
Common NameKK1_025011
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 273aa    MW: 30739.6 Da    PI: 8.9575
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24651genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05111130120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C+ C+k+F+r  n++ H+
  C.cajan_24651 111 FSCTVCNKTFNRFNNMQMHM 130
                    89*****************9 PP
2zf-C2H213.70.00018196218123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C +C+k+F  + + ++H +++
  C.cajan_24651 196 FECRKCHKPFAVRGDWRTHEKNC 218
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.16E-693133No hitNo description
SMARTSM003550.15111133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-5111130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SMARTSM0035598159191IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.1E-5181216No hitNo description
SMARTSM0035580196216IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MQNTHSYSCI SSCGSDSACL EADEVDNEES ISLSLGPPSQ SKSKVLSKYN PKQSSTMHYQ  60
QQNPSYDDLS GVTVALHIGL PTTATKPSST PFHGRYWIPT PQQILIGPTQ FSCTVCNKTF  120
NRFNNMQMHM WGHGSQYRKG SDSLRGSKAG SSMLRLPCYC CEEGCKNNIN YPRSRPLKDF  180
RTLQTHYKRK HGGKPFECRK CHKPFAVRGD WRTHEKNCGK LWFCVCGSDF KHKRSLKDHV  240
RAFGSGHAPH NLSEERGNEG GDYEGEVVFV AFK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24651
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-142AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229715.10.0zinc finger protein WIP6
SwissprotQ9FX681e-111ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A151SDW30.0A0A151SDW3_CAJCA; Protein TRANSPARENT TESTA 1
STRINGGLYMA20G32750.11e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-113C2H2-like zinc finger protein