PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_24619 | ||||||||
Common Name | KK1_026048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 213aa MW: 23857.7 Da PI: 6.5114 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175.6 | 4.8e-55 | 48 | 144 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yreleg+ C.cajan_24619 48 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGD 143 69*********************************************************************************************9 PP NF-YB 97 k 97 + C.cajan_24619 144 R 144 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.4E-51 | 43 | 151 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.06E-38 | 51 | 150 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.2E-26 | 54 | 118 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 6.6E-17 | 82 | 100 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 85 | 101 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 6.6E-17 | 101 | 119 | No hit | No description |
PRINTS | PR00615 | 6.6E-17 | 120 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDTGGFHGYR KLPNTSSASG LKLSVSDMNN MRAENNNNHT GEDNECTVRE QDRFMPIANV 60 IRIMRKILPP HAKISDDAKE TIQECVSEYI SFITGEANER CQREQRKTIT AEDVLWAMSK 120 LGFDDYIEPL TMYLHRYREL EGDRTSMRGE PLGKRTVEYA TLGVATAFVP PPFHPNGYFS 180 AAMGSYVRDA HANNAASSHH PGISNAEPNG RSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-63 | 47 | 139 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_24619 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090984 | 1e-148 | BT090984.1 Soybean clone JCVI-FLGm-5H12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020230631.1 | 1e-161 | nuclear transcription factor Y subunit B-6 | ||||
Swissprot | Q84W66 | 4e-73 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A151SBE4 | 1e-160 | A0A151SBE4_CAJCA; Nuclear transcription factor Y subunit B-6 | ||||
STRING | GLYMA07G39820.1 | 1e-125 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 2e-73 | nuclear factor Y, subunit B6 |