PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24591
Common NameKK1_026019
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 403aa    MW: 46124.4 Da    PI: 7.4415
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24591genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.6e-50461712128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                    +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ 
  C.cajan_24591  46 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENF 140
                    79***************************.89***************8778899****************************************** PP

            NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                    + +glkktLvfy+g+apkg +t+W+m+eyrl
  C.cajan_24591 141 RSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 171
                    *****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.80445192IPR003441NAC domain
SuperFamilySSF1019413.66E-5545191IPR003441NAC domain
PfamPF023654.0E-2547171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSLSHSQSQE EGTTTTTSTT NDNNNNNNNN NNNINKPDDH DHDMVMPGFR FHPTEEELVE  60
FYLRRKVEGK RFNVELITFL DLYRYDPWEL PALAAIGEKE WYFYVPRDRK YRNGDRPNRV  120
TTSGYWKATG ADRMIRTENF RSIGLKKTLV FYSGKAPKGI RTSWIMNEYR LPQHETERYQ  180
KAEISLCRVY KRAGVEDHPS LPRCLPTRPS SSSRASSNSD NNKKHNEMLH HNNMGFVAQA  240
KPNDHIVEKM NETEASSDVN TALGLSKYNA YRAAMGALTT TMGLPVVPLD DEGLMMMQHQ  300
QQSKQPTHAT APACGTIFSA GPSNSNNSVV NMDELNRLMS YQQQYYNVQS HPNQFSTLLM  360
QPSPVVSLNS LPNPLPTTFS DRLWEWNPIP EPPNQEYSNM SFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-554719219165NO APICAL MERISTEM PROTEIN
1ut4_B2e-554719219165NO APICAL MERISTEM PROTEIN
1ut7_A2e-554719219165NO APICAL MERISTEM PROTEIN
1ut7_B2e-554719219165NO APICAL MERISTEM PROTEIN
4dul_A2e-554719219165NAC domain-containing protein 19
4dul_B2e-554719219165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24591
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230721.10.0NAC domain-containing protein 35
SwissprotQ9ZVP81e-112NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A151SBF00.0A0A151SBF0_CAJCA; Putative NAC domain-containing protein 94
STRINGXP_007163863.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-113NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]