PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24583
Common NameKK1_026011
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ZF-HD
Protein Properties Length: 275aa    MW: 30509.6 Da    PI: 8.1298
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24583genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.62.6e-3266122259
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                    + vrY+eClkNhAas+Gg+a+DGCgEfmps geegt++al+C+AC CHRnFHR+eve 
  C.cajan_24583  66 KVVRYRECLKNHAASMGGNATDGCGEFMPS-GEEGTIEALNCSACHCHRNFHRKEVEG 122
                    679**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.7E-2968120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2568131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.7E-3169120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1970119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.8E-19194266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-30197267IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-26205261IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MELSSQEGEI PIPIPISSTT YGGGHGNGHG HGLMIHHDPP HHNHIISSTA PSNGTPTMQE  60
DHVYKKVVRY RECLKNHAAS MGGNATDGCG EFMPSGEEGT IEALNCSACH CHRNFHRKEV  120
EGEPSSCDFH PFSMSGRRLI LGPHKNLLPP EALGYPTGNI LPSRSVPPHQ MIMPYNIGHL  180
PSESDEQEEG GGGMVQARPS SQMVKKRFRT KFSQEQKDKM LNFAEKVGWK IQKQEESVVQ  240
QFCQEIGVKR RVLKVWMHNN KHNLAKKNPP TAPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232062631875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24583
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230704.10.0zinc-finger homeodomain protein 4
SwissprotQ9M9S03e-75ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A151SB960.0A0A151SB96_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGXP_007154109.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-72homeobox protein 31