PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24579
Common NameKK1_026006
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 614aa    MW: 68552.2 Da    PI: 6.2493
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24579genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.7e-2376177198
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F ++g ++
  C.cajan_24579  76 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRQG-EN 168
                    99****************************964333..4459************************************************766.99 PP

                    E..EEEEE- CS
             B3  90 felvvkvfr 98 
                    +el+v+v+r
  C.cajan_24579 169 GELRVGVRR 177
                    99*****97 PP
2Auxin_resp111.67.5e-37203285183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha++t++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+++ +err+sGt+vgv d +++ Wp+S WrsLk
  C.cajan_24579 203 ASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSTVWPDSDWRSLK 285
                    789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-4068192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-4272206IPR015300DNA-binding pseudobarrel domain
CDDcd100178.32E-2274177No hitNo description
SMARTSM010193.0E-2176179IPR003340B3 DNA binding domain
PROSITE profilePS5086311.19476179IPR003340B3 DNA binding domain
PfamPF023628.6E-2176177IPR003340B3 DNA binding domain
PfamPF065075.2E-35203285IPR010525Auxin response factor
PfamPF023095.2E-13479580IPR033389AUX/IAA domain
PROSITE profilePS5174527.402490583IPR000270PB1 domain
SuperFamilySSF542771.62E-10492567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MEQLVASMYE GLEQQMPSFN LPSKILCKVV NVHLRAEPET DEVYAQITLL PEADQSEVTS  60
PDDPLPESPR VKVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMSQQ PPWQELVATD  120
LHGNEWHFRH IFRGQPRRHL LTTGWSVFVS SKKLVAGDAF IFLRQGENGE LRVGVRRLMR  180
QQSNVPSSVI SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSV NKYLEAQSHK  240
LSVGMRFKMR FEGDEIPERR FSGTIVGVGD NKSTVWPDSD WRSLKVQWDE PSSILRPDRV  300
SSWELEPLLS TTPANPQPTQ RNKRARPLIL PSSMADSSMQ GVWKSPIMES TSFSYCDPQL  360
GRGLYPSPKF NSTATNFLGF SGNSSVGHPS NKSIYWSNRM ENSMESISAI ALKEAGEKRQ  420
GTGNGCRLFG IQIHENSNAE GSLQPVTLDA ESDQNSEPSN ANRSDIPSVS CDAEKSSLQS  480
PQESQSKQIR SCTKVHMQGM AVGRAVDLTR FDGYEDLLRK LEEMFDIKAE LCGSQKKWQV  540
VYTDNEDDMM MVGDDPWNEF CTVVRKIFIY TAEEVKKLSP KIGLPINEKD KPSKLDSEAI  600
VNPEDQSSIV GPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0130849355Auxin response factor 1
4ldw_A0.0130849355Auxin response factor 1
4ldw_B0.0130849355Auxin response factor 1
4ldx_A0.0130849355Auxin response factor 1
4ldx_B0.0130849355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24579
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230676.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A151SBC10.0A0A151SBC1_CAJCA; Auxin response factor
STRINGGLYMA07G40270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]