PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_24446 | ||||||||
Common Name | KK1_025662 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | AP2 | ||||||||
Protein Properties | Length: 460aa MW: 52009 Da PI: 8.5301 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.1 | 1.4e-15 | 189 | 248 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g k ++++lg ++ +e+Aa+a++ a++k++g C.cajan_24446 189 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqgrKGRQVYLGGYDVEEKAARAYDMAALKYWG 248 78*******************988885566555*************************98 PP | |||||||
2 | AP2 | 42.5 | 1.7e-13 | 291 | 343 | 1 | 55 |
AP2 1 sgykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g C.cajan_24446 291 SIYRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 343 579****99**********988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-11 | 189 | 248 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.16E-22 | 189 | 256 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-16 | 189 | 258 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.4E-28 | 190 | 262 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.375 | 190 | 256 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-16 | 190 | 257 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 191 | 202 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-16 | 291 | 352 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.68E-24 | 291 | 353 | No hit | No description |
Pfam | PF00847 | 4.8E-8 | 292 | 343 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.94 | 292 | 351 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-31 | 292 | 357 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-18 | 292 | 351 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 333 | 353 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MCSSLPITPL KSNPSLYGVE ALSRSQAQAM HLSLDSMLCN QLSWNGLNNP SNLNHVQQNI 60 SQQQLSYYST LRNHDVILEG SKHQLSNIAE DEISGLKSWY SRDFPTSHAQ ESRIVPVEHN 120 GGESGSIESM AYGDLHSLNL SVSSTSQSSC VTSSYAHTDT KKRGLEMMDQ NQKQIVHRKS 180 IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQGRK GRQVYLGGYD VEEKAARAYD 240 MAALKYWGPS SHINFPLENY QKELEEMKNM TRQEYVAHLR RKSSGFSRGA SIYRGVTSRH 300 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DITRYDVEKI 360 MASNNLLSSE QAKRNKEMED ETRNEAIVNQ KPSTYEQTEE SVLMQKNKTS MPMLFGMPST 420 VSKLLTNTPT SNVDSWDLSS NHRPALSLPQ MPIFAAWTDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_24446 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020230412.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-151 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A151SC46 | 0.0 | A0A151SC46_CAJCA; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | XP_007156691.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-144 | AP2 family protein |