PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24272
Common NameKK1_025133
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 378aa    MW: 42416.8 Da    PI: 7.9549
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24272genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.2e-41113189177
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                    +CqvegC  dls+ak+yhr+h+vCe hsk+p+v+v+gle rfCqqCsrfh l efDe+krsCrrrL++hn+rrrk+ 
  C.cajan_24272 113 CCQVEGCGLDLSSAKNYHRKHRVCESHSKSPKVVVAGLELRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPL 189
                    6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33107175IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18111188IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-38112193IPR004333Transcription factor, SBP-box
PfamPF031106.6E-32114187IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MRWNAKSPPQ WEWDHLFFNT NPTENSKLQS PNWTGEANQE ISFELFDASG SNGCSGSELI  60
HASSSRTTKS ASINSSSNMG SDSKNISFSK DSMSSLSSGK KCKSNDQSIQ YPCCQVEGCG  120
LDLSSAKNYH RKHRVCESHS KSPKVVVAGL ELRFCQQCSR FHGLLEFDEK KRSCRRRLSD  180
HNARRRKPLP EVVQSKRRQQ MSPFAFSRTA TSIACQDIHN SELSQTKDFL MKPAKANTEI  240
PSIVTMLSND SNISFTSKDI ATKNINLGIE DSLNSSDPNT AKDFHRALSL LSTTNSWGSY  300
EGKSISLEHS SHTSATQPAT HAVSQRLPLS SLEYWHSDQP LNSNTWISYS NSDDNGRFHE  360
FQLFREPFES GFPYDQLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271141871184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169186KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24272
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229799.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229800.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229801.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229802.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229803.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229805.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_029129673.10.0squamosa promoter-binding-like protein 12 isoform X1
SwissprotA2YGR51e-50SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A151SDM60.0A0A151SDM6_CAJCA; Squamosa promoter-binding-like protein 12
STRINGXP_004504410.11e-131(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-47squamosa promoter binding protein-like 2