PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24258
Common NameKK1_025118
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27599.3 Da    PI: 8.1853
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24258genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.91e-31959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  C.cajan_24258  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                   79***********************************************96 PP
2K-box96.93.2e-3284172997
          K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                    + ea + s+qqe+ kLk+++e Lqr+qR+l+GedL++L+ keL++Le+qL++slk+iRs++++++l+q+++lq+ke+ l e+n++Lr++
  C.cajan_24258  84 TREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQHKENLLCEANRSLRQR 172
                    555666789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-34281IPR002100Transcription factor, MADS-box
CDDcd002655.61E-45276No hitNo description
PRINTSPR004048.5E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.26689180IPR002487Transcription factor, K-box
PfamPF014864.4E-2691172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMLKTLERY QKCNYGAPEN NVSTREALEL SSQQEYLKLK ARYEALQRSQ RNLMGEDLGP  120
LNSKELESLE RQLDSSLKQI RSTRTQFMLD QLSDLQHKEN LLCEANRSLR QRQLEGYEIN  180
PLQLNPSVED MGYGRHPSQT HGDLFQPLEC EPTLQIGYQA DTVSVVTAGP SMSNYMAGWL  240
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-46751761104Developmental protein SEPALLATA 3
4ox0_B3e-46751761104Developmental protein SEPALLATA 3
4ox0_C3e-46751761104Developmental protein SEPALLATA 3
4ox0_D3e-46751761104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000269|PubMed:9869431}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24258
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0936170.0BT093617.1 Soybean clone JCVI-FLGm-17F9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229791.11e-178MADS-box transcription factor 1 isoform X9
SwissprotO658741e-148MTF1_PEA; MADS-box transcription factor 1
TrEMBLA0A151SDW11e-177A0A151SDW1_CAJCA; MADS-box transcription factor 1
STRINGGLYMA05G28140.31e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-129MIKC_MADS family protein
Publications ? help Back to Top
  1. Buchner P,Boutin JP
    A MADS box transcription factor of the AP1/AGL9 subfamily is also expressed in the seed coat of pea (Pisum sativum) during development.
    Plant Mol. Biol., 1998. 38(6): p. 1253-5
    [PMID:9869431]