PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_24088

Common Name

KK1_025452

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

HSF

Protein Properties

Length: 449aa MW: 50349.2 Da PI: 5.0251

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_24088	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	103.2	2.2e-32	1	86	9	103
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 +++d+++++++sw e++n+fvv++ +fa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i r+ks+ C.cajan_24088 1 MVDDPSTDSVVSWGEKNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGEKQLLKSISRRKST 86 899*****************************************************999.........********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.31E-29	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	7.8E-46	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.4E-32	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	6.7E-27	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-9	32	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	33	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-9	45	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MVDDPSTDSV VSWGEKNNTF VVWNVPQFAT DILPKHFKHN NFSSFVRQLN TYGFRKVDPD 60 RWEFANEGFL RGEKQLLKSI SRRKSTHVNG SQQPSQVHKS SVQSCVEVGK FGLEEEVEIL 120 KRDKNILMQE LVRLRQKQLV TDNQLQNVGQ RVQSMEQRQQ QMMSFLAKAM HSPSFLAQFV 180 QQQNESNRHI PGVNKKRRLH RQEEDSLATK DLHDSLDGHI VKYQSSINEA ANALFRQILQ 240 INNSTTAESS IKNPDVFLID DVPSSISFDS SSSSTQVSNV TLSMVPPVSE LTCMEAESQF 300 PINCMPSSMS EVQSSPALMG FCNSQGMETE SSLVNHDLSV GGADTRNMGE IDMVSTVLDD 360 VHAAEADHFS PDADGLSKLP GINDEFWELF FRPSPITGDT QETKCSSLGC GLPEDQGLPS 420 ERENKQEKID KIQHVDHLTQ QMGLLTSES

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MVDDPSTDSV VSWGEKNNTF VVWNVPQFAT DILPKHFKHN NFSSFVRQLN TYGFRKVDPD  60
RWEFANEGFL RGEKQLLKSI SRRKSTHVNG SQQPSQVHKS SVQSCVEVGK FGLEEEVEIL  120
KRDKNILMQE LVRLRQKQLV TDNQLQNVGQ RVQSMEQRQQ QMMSFLAKAM HSPSFLAQFV  180
QQQNESNRHI PGVNKKRRLH RQEEDSLATK DLHDSLDGHI VKYQSSINEA ANALFRQILQ  240
INNSTTAESS IKNPDVFLID DVPSSISFDS SSSSTQVSNV TLSMVPPVSE LTCMEAESQF  300
PINCMPSSMS EVQSSPALMG FCNSQGMETE SSLVNHDLSV GGADTRNMGE IDMVSTVLDD  360
VHAAEADHFS PDADGLSKLP GINDEFWELF FRPSPITGDT QETKCSSLGC GLPEDQGLPS  420
ERENKQEKID KIQHVDHLTQ QMGLLTSES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	9e-22	1	86	27	123	Heat shock factor protein 1
5d5u_B	1e-21	1	83	36	129	Heat shock factor protein 1
5d5v_B	1e-21	1	83	36	129	Heat shock factor protein 1
5d5v_D	1e-21	1	83	36	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_24088

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020230057.1	0.0	heat stress transcription factor A-1b
Swissprot	Q84T61	1e-134	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A151SD53	0.0	A0A151SD53_CAJCA; Heat stress transcription factor A-1
STRING	GLYMA01G44330.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1843	31	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-118	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]