PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24017
Common NameKK1_025379
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 442aa    MW: 50165.7 Da    PI: 6.282
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24017genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4592.8e-140494391374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lLl+cA++v++g+le+a+++L+++s+laspdgd+mqR+a+yfteALa r+++++++l +al++++     +see++++klf+e++P+lk++++
  C.cajan_24017  49 LIHLLLTCANHVAAGSLENANTILEQISQLASPDGDTMQRIASYFTEALADRILKTWPGLHRALNSTRIV--MVSEEIHVQKLFFELFPFLKVAYI 142
                    689*************************************************************988886..6*********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    ++NqaI+ea+ege++vHiiD+++ +++QW+aLlq L++R egpp+lRiTgv++    +ke l +++++L++ Ae+l++pf+fn+ ++++le+l+++
  C.cajan_24017 143 LTNQAIVEAMEGEKMVHIIDLNAAEPAQWIALLQVLSARLEGPPHLRITGVHQ----QKEVLDQMAHKLTEEAEKLDIPFQFNP-IVSKLENLDFD 233
                    *****************************************************....9**************************.7999******* PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                    +Lrvk+gEala++++lqlh+ll                        +  +  +s+ +++L+++++lsPkv+vv+eq+++hn+++++er+leal+ y
  C.cajan_24017 234 KLRVKTGEALAISSILQLHSLLaldddasrrkspllsknsnathlhKVLLMNQSTLESFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLEALYSY 329
                    *******************************************997444444557778************************************** PP

           GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                    +alfd+le++++r+s er k+E++l+g+ei+n++aceg+er+erhe++ kW +rl+ +GF ++pls++ + qa++ l+ ++ +gyr+ ee+gs+++
  C.cajan_24017 330 AALFDCLESTVSRASLERLKIEKMLFGEEIKNIIACEGSERKERHEKMDKWFQRLDLSGFANIPLSYYGMLQARRFLQSYGCEGYRMREENGSVMI 425
                    ************************************************************************************************ PP

           GRAS 361 gWkdrpLvsvSaWr 374
                    +W+dr+L+s++aWr
  C.cajan_24017 426 CWQDRSLFSTTAWR 439
                    *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.43923419IPR005202Transcription factor GRAS
PfamPF035149.9E-13849439IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MESMFQEEGS SSVTSSPLQF FSMMSLSPGI GSPYPWHREL KSEERGLCLI HLLLTCANHV  60
AAGSLENANT ILEQISQLAS PDGDTMQRIA SYFTEALADR ILKTWPGLHR ALNSTRIVMV  120
SEEIHVQKLF FELFPFLKVA YILTNQAIVE AMEGEKMVHI IDLNAAEPAQ WIALLQVLSA  180
RLEGPPHLRI TGVHQQKEVL DQMAHKLTEE AEKLDIPFQF NPIVSKLENL DFDKLRVKTG  240
EALAISSILQ LHSLLALDDD ASRRKSPLLS KNSNATHLHK VLLMNQSTLE SFLNALWGLS  300
PKVMVVTEQD SNHNGSTLME RLLEALYSYA ALFDCLESTV SRASLERLKI EKMLFGEEIK  360
NIIACEGSER KERHEKMDKW FQRLDLSGFA NIPLSYYGML QARRFLQSYG CEGYRMREEN  420
GSVMICWQDR SLFSTTAWRS RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-714144111381Protein SCARECROW
5b3h_A2e-714144110380Protein SCARECROW
5b3h_D2e-714144110380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230186.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A151SCZ30.0A0A151SCZ3_CAJCA; Scarecrow-like protein 3
STRINGXP_004517294.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]