PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23926
Common NameKK1_024725
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 483aa    MW: 53708.2 Da    PI: 9.2994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23926genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-0579101123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C k F r  nL+ H r H
  C.cajan_23926  79 FVCEICLKGFQRDQNLQLHRRGH 101
                    89*******************88 PP
2zf-C2H213.40.00022155177123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +t+
  C.cajan_23926 155 WKCEKCSKRYAVQSDWKAHSKTC 177
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-478101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.30579101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.8E-5150199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDDGEISNAF PHHNTSTAAS NNQPPVLKRK RNLPGNPGKF FSMPYHSHHL SFISTFSHHH  60
PEAEVIALSP KTLMATNRFV CEICLKGFQR DQNLQLHRRG HNLPWKLKQR TSKEVRKRVY  120
VCPEKTCVHH HHSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR  180
EYKCDCGTIF SRRDSFITHR AFCDALAEET ARVNAASNIS NYSIMQNSLG PNMTTHFSSF  240
FKPNSCTEET VNNQTSKGLS LWMTQTSQAH EPIMANNNLH EFHQLGSASS PTTAIYGGNP  300
LASCSNPPPS NYHLNWVFGN KLSSNGSHQE LTSTASLPLV NNIVKDNPNL QLISVPSLYS  360
SQHQSHQTNS ANMSATALLQ KAAQIGTTSS DPSLFLGNIG LKCNSPGQDG NKFCGMYGSS  420
SVVLTSHGSE AENNYSGDLS QMPPSKRRHV QNEETAWGQT RDFLGVGGVN HLPPFINQRM  480
DLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-37151218370Zinc finger protein JACKDAW
5b3h_F9e-37151218370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23926
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229441.10.0zinc finger protein MAGPIE
SwissprotQ9ZWA61e-134IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A151SEW90.0A0A151SEW9_CAJCA; Zinc finger protein MAGPIE
STRINGGLYMA13G36960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]