PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_23895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 411aa MW: 45770.7 Da PI: 6.6499 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.1 | 2.3e-36 | 22 | 136 | 2 | 113 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssg.. 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + a++++++a+ ss C.cajan_23895 22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELppwqptpN-----T--ADAENNNAG-SSDMai 109 79**************************************************************66432221.....1..222222222.111134 PP TCP 89 .kaaksaa.kskksqksaasalnlake 113 ++++s+ + + +++ + + n +++ C.cajan_23895 110 aEQSESSGyNFQLQRQLGEDHDNNHHH 136 444444443555555555555555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-33 | 22 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.986 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKNAID KLAELPPWQP TPNTADAENN NAGSSDMAIA EQSESSGYNF 120 QLQRQLGEDH DNNHHHSPFI PSPIDTDAIA FFPTTTATSS INFQTYPPDI ISRTNNSTED 180 LGLSLHSFQD PGLIHGQPQA GANQTPSNDQ NQTLFSGSTQ VGFEANYPRI VAWNNDASTA 240 DMNRTGFMVN SQALLSQGGS NAYSQRGTLQ SSFSPSLRPW SDIPMASSEH HHKSQPIQQA 300 SIFGSRFLSD ALPGFCIPAR IQGEDXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 360 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_23895 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020229472.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_029129612.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 2e-67 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A151SET1 | 0.0 | A0A151SET1_CAJCA; Transcription factor TCP4 | ||||
STRING | XP_007149767.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 8e-70 | TCP family protein |