PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23770
Common NameKK1_024458
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GATA
Protein Properties Length: 57aa    MW: 6420.5 Da    PI: 8.7067
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23770genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.2e-15942132
           GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32
                   C++Cg ++  Tp++Rrgp+g+++LCnaCGl ++ 
  C.cajan_23770  9 CTHCGISSkcTPMMRRGPSGPSSLCNACGLSWAN 42
                   ******999***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-5357IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-12842IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.7E-9843No hitNo description
PfamPF003206.2E-13942IPR000679Zinc finger, GATA-type
PROSITE patternPS003440936IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
CEFSCLNRCT HCGISSKCTP MMRRGPSGPS SLCNACGLSW ANRVGFLHFA KLYFYYF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194178.15e-19GATA-type zinc finger protein with TIFY domain-containing protein
RefseqNP_849435.15e-19GATA-type zinc finger protein with TIFY domain-containing protein
RefseqXP_020873632.15e-19GATA transcription factor 25
RefseqXP_020873633.15e-19GATA transcription factor 25
SwissprotQ9LRH65e-20GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A151SFJ72e-34A0A151SFJ7_CAJCA; GATA transcription factor 26 (Fragment)
STRINGfgenesh2_kg.7__1832__AT4G24470.22e-18(Arabidopsis lyrata)
STRINGBostr.7867s0254.1.p2e-18(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2429633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-22GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]