PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_23644

Common Name

KK1_024331

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 229aa MW: 25501.3 Da PI: 9.3954

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_23644	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ Fs++ L H++ H C.cajan_23644 54 FSCNYCKREFSSSQALGGHQNAH 76 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.64E-7	51	81	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-4	52	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.9E-6	54	78	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.759	54	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MKHSEKRLKA SKELVDFMKL SKDNMAQEPS SSKVVDSPNF YAKGDDENNN AKTFSCNYCK 60 REFSSSQALG GHQNAHKQER ALAKRRQGFD DGGFGHYPYY PYPTFYNSHS LYGGSFNRAL 120 GVRTDSMIHK HSWTPRYDHT WLKKNPHGVS SSSLFDGFGI MKGDASAGLR PEYGNANVGT 180 LSLFEKGFTN SSSQIETTPT VAARIDAHPS MPQETSKEAS LNLDLSLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_23644

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020229080.1	1e-173	uncharacterized protein LOC109810107
TrEMBL	A0A151SG38	1e-171	A0A151SG38_CAJCA; Zinc finger protein 3
STRING	GLYMA06G14783.1	3e-96	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	6e-19	C2H2 family protein