PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_23536 | ||||||||
Common Name | KK1_024223 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 214aa MW: 24214.8 Da PI: 5.9525 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175.1 | 7.1e-55 | 40 | 135 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +e drflPianv+rimkkv+P n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyveplk yl+ky+e+egek C.cajan_23536 40 KEMDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDVIWAITTLGFEDYVEPLKSYLQKYKEIEGEK 135 799******************************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.8E-53 | 36 | 162 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.95E-40 | 43 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-27 | 45 | 109 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.2E-21 | 73 | 91 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 76 | 92 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.2E-21 | 92 | 110 | No hit | No description |
PRINTS | PR00615 | 4.2E-21 | 111 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MDPDESHGTL PNGFNTGSPE SPCLKTSTNT TPTTHNNNNK EMDRFLPIAN VGRIMKKVIP 60 PNGKISKDAK ETVQECVSEF ISFVTGEASD KCQREKRKTI NGEDVIWAIT TLGFEDYVEP 120 LKSYLQKYKE IEGEKLNIPK QLRSEQRLQH HPHNSNQDEN NQTFNGAYAS TNLISQPPYV 180 ASDQKFSSLP FSPNSIQSQL RQQDQIDSVG HWYE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 5e-44 | 40 | 130 | 3 | 93 | NF-YB |
4awl_B | 6e-44 | 40 | 130 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 6e-44 | 40 | 130 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_23536 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215942.1 | 1e-160 | nuclear transcription factor Y subunit B-7 | ||||
Swissprot | Q9SIT9 | 7e-67 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | A0A151TLE8 | 1e-159 | A0A151TLE8_CAJCA; Nuclear transcription factor Y subunit B-7 | ||||
STRING | GLYMA05G32680.1 | 1e-127 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13249 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G13570.1 | 7e-68 | nuclear factor Y, subunit B7 |
Publications ? help Back to Top | |||
---|---|---|---|
|