PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_23477 | ||||||||
Common Name | KK1_024164 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 27478.3 Da PI: 9.0238 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 132 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp ++ r++lg+f tae Aa+a+++a ++++g C.cajan_23477 132 KYRGVRQRP-WGKWAAEIRDP----IKaSRVWLGTFQTAEAAARAYDEASLRFRG 181 8********.**********7....357************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.8E-33 | 131 | 190 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.067 | 132 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 132 | 195 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-22 | 132 | 191 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-13 | 132 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.61E-32 | 132 | 191 | No hit | No description |
PRINTS | PR00367 | 7.6E-12 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-12 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MFSGLNRERE MSAMISALTH VVCGEDHSIN NNNNNNNNNS EVFVTSNMAC ASVAVAPSSS 60 HGGNSVLKRR REEDNTNTNT NTSFGEFSRE ASQPAISTIT ESSSRNREYE YEYEYEYKSE 120 EKGRREEQER RKYRGVRQRP WGKWAAEIRD PIKASRVWLG TFQTAEAAAR AYDEASLRFR 180 GNKAKLNFPE NVRLRQPNPP TLYHHIPMSS HNVQSSPLLS SSSTMTSPQP PPVPSIHLPS 240 HSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 131 | 192 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_23477 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215728.1 | 1e-180 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A151TL78 | 1e-179 | A0A151TL78_CAJCA; Ethylene-responsive transcription factor ERF114 family | ||||
STRING | GLYMA05G32040.1 | 3e-83 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 2e-23 | ERF family protein |