PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_23386 | ||||||||
Common Name | KK1_024072 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 277aa MW: 30867.8 Da PI: 8.0383 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 116 | 170 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k C.cajan_23386 116 RKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 170 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.5 | 5.6e-41 | 116 | 206 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk C.cajan_23386 116 RKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 206 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 102 | 170 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.34E-18 | 106 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 112 | 172 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 114 | 176 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.16E-15 | 116 | 173 | No hit | No description |
Pfam | PF00046 | 3.5E-15 | 116 | 170 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 147 | 170 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.5E-26 | 172 | 215 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.2E-11 | 172 | 206 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MELALSLGDT SKSFTLPTKE ASGFCVAPSF TVGRGSEEKK SDDERRGSSD PPLQLDLLPF 60 TPVQRSQPPS QLRIPWLTQA CGAARVLDVN LFPAAAEDGD DGTSLVSDDE ENGSTRKKLR 120 LSKEQSAFLE ESFKEHTTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY 180 LKRCCETLTE ENRRLQKELQ ELRALKTSQP FYMQLPATTL TMCPSCERVA TNSTTTNQTS 240 NINNGSQIPV ELSLSKPRIL PFPTGQAQAQ AHQIASS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | TRKKLRL |
2 | 164 | 172 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_23386 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 3e-95 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215741.1 | 1e-177 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | P46665 | 3e-80 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A151TL05 | 0.0 | A0A151TL05_CAJCA; Homeobox-leucine zipper protein HAT14 | ||||
STRING | GLYMA09G16790.1 | 1e-151 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 8e-66 | homeobox from Arabidopsis thaliana |