PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_23172 | ||||||||
Common Name | KK1_023852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 26765 Da PI: 6.5948 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ede l+++ ++G+ +W t +++ g++R++k+c++rw++yl C.cajan_23172 14 RGPWSPQEDETLKNYLMKHGTAgNWITLPQKAGLKRCGKSCRLRWLNYL 62 89******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 9.4e-15 | 69 | 112 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd+l+ + + G+++W++Ia+ ++ gRt++++k++w++ C.cajan_23172 69 GGFTDEEDQLICTLYATIGSRQWSLIAAQLP-GRTDNDVKNHWNT 112 569****************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.633 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.05E-25 | 11 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.41E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.976 | 63 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-12 | 67 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-13 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.18E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPQ EDETLKNYLM KHGTAGNWIT LPQKAGLKRC GKSCRLRWLN 60 YLRPHIKHGG FTDEEDQLIC TLYATIGSRQ WSLIAAQLPG RTDNDVKNHW NTKLKKKFLA 120 ENTNATVCPQ FSTSTPQPQV EDHVFDHKNS SESHVLRFEQ TPIPNPSPLP LGSDVSGLGS 180 SFSAPLPNEV SLLSNSISLV KEENETQWFG YHDNIEGEAF LLDFVYEDLL HNGFVSQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 14 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_23172 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215941.1 | 1e-177 | transcription factor MYB87 | ||||
Swissprot | Q9FKL2 | 2e-67 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A151TKG1 | 1e-178 | A0A151TKG1_CAJCA; Transcription factor RAX3 | ||||
STRING | XP_007160258.1 | 1e-139 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 6e-70 | myb domain protein 36 |
Publications ? help Back to Top | |||
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